Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cmo15g01243 ATGACGCAGTTTCTTCAACCCTCCATTTCTCTGCGTTCACTGCGTAGAGGGTTGCAATTTTCATCTTCTTCCTCTTTCCATCGCTCTGGTTCCTTCAGATTAAGATCCTTCTGTTGCCGAATGTCGGCCGATTCTGCAAATCGAAGCCAATCCATCACCTTGCCCTGCCAACACGAGCAACCTGTGCAGATTCTCGCTGCACCCGGTCTCTCCGATTCCGATTTACGGAATGCTGTGGATTCATCGTTGTTCAAACAATGGCTGATGAACTTGCAAGGTGAGAGTGGGATTTTAGCCCAGGGAGCCATGTCTCTGAAGCGCGTGCTTATCCAGGGAGTTGATATGTTCGGAAGCAGAATTGGGTTTCTCAAATTTCAAGCCGATATCTACGATAAGCAAACCGGGAAGAAGGTCCCAGGTATTGTTTTTGCGAGAGGACCTGCTGTTGCTGTTCTTATCCTTTTGAGTTGCGAAGGAGAAACTTATGCTGTCCTCACTGAGCAGGTTAGAGTTCCGGTTGGGAAGCTCATGTTGGAATTGCCTGCTGGTATGTTGGATGATGATAAGGGGGATTTTGTTGGCACTGCGGTTCGTGAGGTTGAAGAAGAAATTGGCATTCGATTAAAGCTTGAGGACATGGTCAATCTTACTGGCTTCTTGGACCCATCGACGGGATGCAGAATCTTTCCTTCTCCTGGTGGATGTGATGAGGGAATTGGTCTGTTCTTGTACCGAGGATCTGCAAGTAAAGAGACAATTGCAGAGCTGCAAGGAAAGGAAACCGGACTCAGGGATCATGGTGAGCTGATTAAGGTTCATGTTGTTCCCTATGAAAAACTGTGGCGAGTTACAGCAGATGCGAAGGCTCTAATGGCCTTTGGACTCTATGAAATGGCTAAGAAGGAAGGGCTTTTGCCTTCTTTGAAACAATGCTAG 936 47.33 MTQFLQPSISLRSLRRGLQFSSSSSFHRSGSFRLRSFCCRMSADSANRSQSITLPCQHEQPVQILAAPGLSDSDLRNAVDSSLFKQWLMNLQGESGILAQGAMSLKRVLIQGVDMFGSRIGFLKFQADIYDKQTGKKVPGIVFARGPAVAVLILLSCEGETYAVLTEQVRVPVGKLMLELPAGMLDDDKGDFVGTAVREVEEEIGIRLKLEDMVNLTGFLDPSTGCRIFPSPGGCDEGIGLFLYRGSASKETIAELQGKETGLRDHGELIKVHVVPYEKLWRVTADAKALMAFGLYEMAKKEGLLPSLKQC 311
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
15 8541899 8545541 + CmoCh15G012430.1 Cmo15g01243 398751

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cmo15g01243 311 CDD ADPRase_NUDT5 145 298 - -
Cmo15g01243 311 SUPERFAMILY Nudix 122 297 IPR015797 -
Cmo15g01243 311 Pfam NUDIX domain 145 282 IPR000086 -
Cmo15g01243 311 ProSiteProfiles Nudix hydrolase domain profile. 144 297 IPR000086 -
Cmo15g01243 311 Gene3D Nucleoside Triphosphate Pyrophosphohydrolase 116 302 - -
Cmo15g01243 311 PANTHER UDP/ADP-SUGAR PYROPHOSPHATASE 27 307 - -
Cmo15g01243 311 PANTHER NUDIX HYDROLASE 14, CHLOROPLASTIC 27 307 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cmo15g01243 K18447 NUDX14; ADP-sugar diphosphatase [EC:3.6.1.21] - csv:101208090 499.59
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi2g439 . . . . . . . . . . . Cma15g01181 . . . . . . . . . . . . . . . . . . . Cone8ag0345 Cone12ag0339 . . . . . . . Blo19g00291 . . Bpe08g01456 . . . . . Cmo15g01243 . . . . . Cpe13g00192 . . . . . . . Cla01g00327 Cam01g0339 Cec01g0333 Cco01g0346 Clacu01g0343 Cmu01g0323 Cre09g2187 . . . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0006179 1 1 1 0 1 2 1 2 2 1 1 2 1 1 1 1 2 2 1 2 1 3 1 1 1 1 1 1 1 1 38
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Cmo15g01243 Cmo_Chr15 FPKM 6.537022 5.749807 6.401212 6.914784 11.715388 11.344001 12.299106 6.984408 6.46646 7.494994