Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cmo15g01247 ATGAACTATTCCCTCTCCCCCATCTCTCCCTTAGAGAATAAGAACGTTGCCTCCAAAAAGCCCAAAGCATGCAGCCGGAGAACGCCGCCGCCTAACACTTCCAACGATGAGAACCCCAACGAACAAAAAAGGAAGAAGATTATGCATAGAGATGTGGAGCGCCAAAGGAGACAAGAAATGTCCTCTCTTTACTCCTCTCTTCGCTCACTTCTCCCCCTTGAATACCTCAAGGGAAAGCGCTCCATATCTGACCACATGCATGAAACGGTTAAGTACATTCAATCTATTCAGATAAGAATCCGACAACTGTCTGATCAAAGAGACGAGCTGAAAAGCCTCTCCAGCGAGAATATGGCCGTCGGTACGGCGGAAACGCTTAATTCCTCACGGACGGATTCAGTGGTGGTGAGGTCGAAAAATGAATTAGGAATTCAAGTTGTTATAGACACAACCATCCAACATAGGCTCCCTGTCTCTGACATTCTTCGAGTTTTAGTTGCCGAAGGACTTGAAATTATGAGTTGCATTACGACCAAAGTAAATGAGAGACCAACGCTCGCCGTGTTCAGACCAAGCCCGTGGAAGCTCGCTCATGCCACCTTTTATGGCGACGAAACTGCCTCCGCCACTATGGGAGGAGCATGTGGGTATGGAAACTTGTTTACGAATGGTTATGGAACCGATACAGTAGCGTTGAGCTCGACATTGTTCAACAATGGCTACGCTTGTGGGACATGCTTTCAGATCAAATGCGTGCAATCGAAGGCTTGCTACGCAAACGTGAAATACACCACCGTGACGGCGACAAACCTATGCCCGCCAAATTGGTCACAGGACTCGAACGCGGGCGGGTGGTGCAACCCACCAAGAGTTCACTTCGACATGGCCAAGCCAGCGTTCATGAAGATCGCTTGGTGGAAGGCCGGAATAGTCCCGGTTGCATACCGTAGGGTTCCGTGTGCGAAAAAAGGCGGCGTTCGATTCAGCTTCCAAGGAAATGGGTATTGGCTATTGGTGTACGTGATGAACGTAGGCGGCGGCGGCGATGTGTACTCAATGGCGGTGAAAGGAAGCAAAACGGGGTGGATAACAATGAGCCATAACTGGGGAGCTTCATACCAAGCTTTTTCATCATTGGGTGGCCAAGGCCTCTCTTTCAGAATCACTTCCTACACAACAAGAGAGACCCTTTCTTTATGGAATGTCATACCTTCGAATTGGCAAGTTGGGTTGACTTATAATACCAATTTCAACTTCCGTTGA 1263 48.61 MNYSLSPISPLENKNVASKKPKACSRRTPPPNTSNDENPNEQKRKKIMHRDVERQRRQEMSSLYSSLRSLLPLEYLKGKRSISDHMHETVKYIQSIQIRIRQLSDQRDELKSLSSENMAVGTAETLNSSRTDSVVVRSKNELGIQVVIDTTIQHRLPVSDILRVLVAEGLEIMSCITTKVNERPTLAVFRPSPWKLAHATFYGDETASATMGGACGYGNLFTNGYGTDTVALSSTLFNNGYACGTCFQIKCVQSKACYANVKYTTVTATNLCPPNWSQDSNAGGWCNPPRVHFDMAKPAFMKIAWWKAGIVPVAYRRVPCAKKGGVRFSFQGNGYWLLVYVMNVGGGGDVYSMAVKGSKTGWITMSHNWGASYQAFSSLGGQGLSFRITSYTTRETLSLWNVIPSNWQVGLTYNTNFNFR 420
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
15 8565520 8570002 + CmoCh15G012470.1 Cmo15g01247 398755
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cmo15g01247 420 Coils Coil 93 113 - -
Cmo15g01247 420 ProSiteProfiles Expansin, Cellulose-binding-like domain profile. 335 415 IPR007117 -
Cmo15g01247 420 SMART dpbb_1 229 315 IPR007112 -
Cmo15g01247 420 PRINTS Expansin signature 283 300 IPR002963 GO:0009664
Cmo15g01247 420 PRINTS Expansin signature 224 238 IPR002963 GO:0009664
Cmo15g01247 420 PRINTS Expansin signature 300 313 IPR002963 GO:0009664
Cmo15g01247 420 PRINTS Expansin signature 401 417 IPR002963 GO:0009664
Cmo15g01247 420 PRINTS Expansin signature 324 336 IPR002963 GO:0009664
Cmo15g01247 420 PRINTS Expansin signature 264 274 IPR002963 GO:0009664
Cmo15g01247 420 PRINTS Expansin signature 336 357 IPR002963 GO:0009664
Cmo15g01247 420 SMART finulus 50 102 IPR011598 GO:0046983
Cmo15g01247 420 Pfam Lytic transglycolase 229 315 IPR009009 -
Cmo15g01247 420 Pfam Expansin C-terminal domain 326 404 IPR007117 -
Cmo15g01247 420 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 43 113 IPR036638 GO:0046983
Cmo15g01247 420 SUPERFAMILY PHL pollen allergen 322 414 IPR036749 -
Cmo15g01247 420 Gene3D - 325 420 IPR036749 -
Cmo15g01247 420 MobiDBLite consensus disorder prediction 38 58 - -
Cmo15g01247 420 ProSiteProfiles Expansin, family-45 endoglucanase-like domain profile. 212 325 IPR007112 -
Cmo15g01247 420 PANTHER EXPANSIN-A7 174 420 - -
Cmo15g01247 420 PANTHER EXPANSIN-A15 174 420 IPR002963 GO:0009664
Cmo15g01247 420 Gene3D - 35 122 IPR036638 GO:0046983
Cmo15g01247 420 MobiDBLite consensus disorder prediction 1 59 - -
Cmo15g01247 420 PRINTS Expansin/Lol pI family signature 193 208 IPR007118 GO:0005576
Cmo15g01247 420 PRINTS Expansin/Lol pI family signature 233 251 IPR007118 GO:0005576
Cmo15g01247 420 PRINTS Expansin/Lol pI family signature 308 324 IPR007118 GO:0005576
Cmo15g01247 420 PRINTS Expansin/Lol pI family signature 211 229 IPR007118 GO:0005576
Cmo15g01247 420 PRINTS Expansin/Lol pI family signature 401 415 IPR007118 GO:0005576
Cmo15g01247 420 PRINTS Expansin/Lol pI family signature 362 376 IPR007118 GO:0005576
Cmo15g01247 420 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 44 96 IPR011598 GO:0046983
Cmo15g01247 420 Pfam Helix-loop-helix DNA-binding domain 45 97 IPR011598 GO:0046983
Cmo15g01247 420 Gene3D - 177 321 IPR036908 -
Cmo15g01247 420 SUPERFAMILY Barwin-like endoglucanases 187 343 IPR036908 -
       

Event-related genes

Select Gene_1 Gene_2 Event_name
Cmo06g00753 Cmo15g01247 CCT
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cmo15g01244 Cmo-Chr15:8548894 Cmo15g01247 Cmo-Chr15:8565520 1.93E-22 dispersed
Cmo15g01245 Cmo-Chr15:8549984 Cmo15g01247 Cmo-Chr15:8565520 2.93E-89 dispersed
Cmo15g01247 Cmo-Chr15:8565520 Cmo02g00797 Cmo-Chr2:4921039 3.83E-90 dispersed
Cmo16g00170 Cmo-Chr16:772068 Cmo15g01247 Cmo-Chr15:8565520 3.11E-07 dispersed
Cmo18g01226 Cmo-Chr18:12143880 Cmo15g01247 Cmo-Chr15:8565520 3.90E-19 dispersed
Cmo20g00212 Cmo-Chr20:1024601 Cmo15g01247 Cmo-Chr15:8565520 4.69E-30 dispersed
Cmo15g01246 Cmo-Chr15:8558787 Cmo15g01247 Cmo-Chr15:8565520 2.88E-50 tandem
Cmo15g01247 Cmo-Chr15:8565520 Cmo06g00753 Cmo-Chr6:3913410 3.44E-152 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
11210 PF03330 DPBB_1 7.50E-21 CL0199 Cmo TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cmo15g01247 - - csv:101221231 492.656