Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cmo15g01249 ATGGAAGATCAAGCCCGGACCCCTCAATCATCTGCTAGGGCTTCACCTTCTTCTTCTTCCTCTTCCTCCTCTAATTTGCAGCTCAATTTGCCTCCTTCAATGTCTAGGGCTGCTCACTCACTTGAAACCCTAACTCCATCTCGCCAAATTGGCCGCATGATCAATATCAATCACCATTTGTCTCCATCCAGAGCTATCTACTCTGATAGGTTCATACCAAGTAGATCTGGTTCCAATTTTGCCCTATTTGATATTTACCCTGTCTCTAATTCCGCTTCTGATGGTCGCGAAGATACTTCTACTGCTTATGCTACGCTTCTTCGAACGGCATTGTTTGGCCCTGATTCTGGAGTAGTTCCTCCTGCTACTCCTGAGAAGAGAAGCTCCCCAATGTGCCTTCCTAATCATAATATTTTTCGCTATAAAACTGAGACTAGGAGGTCAATGCACTCCCTCTCGCCTTTTGGGTTTGATGATGCGGCTCGTGGGCTTAGTCCTAGCCCTGTTAAGACTCCACGGAAGGTTCCTCGATCGCCTTATAAGGTGAATTTCTTACGAGAATTTCGTGATTATTGGTCTTTGGATTCTCTAACCGTCTTGGATGCACCTGCTCTTCAAGATGATTTTTATCTGAATCTTGTGGATTGGTCTTCGCATAATGTGCTTGCTGTTGGGTTGGGTAATTGTGTTTATCTCTGGAATGCGTGCAGTAGTAAGGTCACCAAGTTATGTGACTTGGGAATTGATGACAGTGTGTGTTCAGTGGGCTGGGCACAGCGTGGAACTCATCTTGCTGTTGGCACTAGCAATGGGAAAGTCCAGATTTGGGATGCATCACGCTGTAAAAGGGTTAGGACCATGGAGGGTCATCGGTTACGAGTTGGGGCCTTAGCTTGGAGCTCGTCTCTTTTATCATCCGGTAGCCGGGATAAAAGTATCCTTCAACGAGATATTCGAGCTCAGGATGATTTTACTTCTAAATTATCTGGCCATAAATCAGAGGGTCTTATGTTTCCCATTGAATCTTTTGGACATGAGTTTGCATACTCTTACTGCTTGAATGATTTCTTCTTAGGGGAAAACTGCATTTCTCTTGTTTGTGGATTGAAATGGTCGTACGATAACCGTGAATTAGCATCAGGCGGAAACGATAACAGATTATTCGTTTGGAATCAACATTCAACCCAACCAGTACTTAAATTTTATGAGCACACAGCTGCTGTAAAAGCTATAGCATGGTCTCCTCATCTTCATGGACTACTTGCATCAGGGGGCGGAACTGCAGACCGATGCATTCGTTTTTGGAACACAACGACCAATACACATTTGAGCTGCATGGACACTGGAAGTCAGGCTGGATGTTCTTGTAATTATATTGCTCCCAATCTGGCATATATGCTGTCTGGTTTCATCAAAATTATACCACTGAGGTTGTTGTTCAAGTGTCTACTATCAAGATTTGTCTTAATCTCCTTATACCTTCTTGATCCTGAGGTGTGCAATCTCGCGTGGTCTAAGAATGTTAATGAACTTGTTAGTACTCATGGGTTCTCCCAAAACCAGATAATAGTCTGGAGATATCCAACTATGTCTAAGTTGGCAACATTGACCGGCCATACTTTCAGAGTTCTTTATCTTGCCATATCTCCTGATGGACAGACCATTGTAACAGGGGCGGGTGATGAAACGCTGAGATTTTGGAATGTCTTCCCGTCGCCTAAATCGCAGATCAAGTTAATGAGACAAAATGAAGAGCTGCTACTGAGCTGTCTTGAAAACTTTAAAATGATATACACATGTTTGTCTGACATTATGTTCTTGGGATCCTTATGGAAAGGACTTTCTTGTGTTCCATTTCATTGTCAACTCAAACTCACATCTGGGTTTGAATCATAA 1896 43.14 MEDQARTPQSSARASPSSSSSSSSNLQLNLPPSMSRAAHSLETLTPSRQIGRMININHHLSPSRAIYSDRFIPSRSGSNFALFDIYPVSNSASDGREDTSTAYATLLRTALFGPDSGVVPPATPEKRSSPMCLPNHNIFRYKTETRRSMHSLSPFGFDDAARGLSPSPVKTPRKVPRSPYKVNFLREFRDYWSLDSLTVLDAPALQDDFYLNLVDWSSHNVLAVGLGNCVYLWNACSSKVTKLCDLGIDDSVCSVGWAQRGTHLAVGTSNGKVQIWDASRCKRVRTMEGHRLRVGALAWSSSLLSSGSRDKSILQRDIRAQDDFTSKLSGHKSEGLMFPIESFGHEFAYSYCLNDFFLGENCISLVCGLKWSYDNRELASGGNDNRLFVWNQHSTQPVLKFYEHTAAVKAIAWSPHLHGLLASGGGTADRCIRFWNTTTNTHLSCMDTGSQAGCSCNYIAPNLAYMLSGFIKIIPLRLLFKCLLSRFVLISLYLLDPEVCNLAWSKNVNELVSTHGFSQNQIIVWRYPTMSKLATLTGHTFRVLYLAISPDGQTIVTGAGDETLRFWNVFPSPKSQIKLMRQNEELLLSCLENFKMIYTCLSDIMFLGSLWKGLSCVPFHCQLKLTSGFES 631
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
15 8576869 8579860 + CmoCh15G012490.1 Cmo15g01249 398757

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cmo15g01249 631 PANTHER PROTEIN FIZZY-RELATED 1 498 578 - -
Cmo15g01249 631 PANTHER PROTEIN FIZZY-RELATED 1 364 454 - -
Cmo15g01249 631 Gene3D - 489 570 IPR015943 GO:0005515
Cmo15g01249 631 ProSiteProfiles Trp-Asp (WD) repeats circular profile. 536 569 - -
Cmo15g01249 631 SMART WD40_4 394 436 IPR001680 GO:0005515
Cmo15g01249 631 SMART WD40_4 237 277 IPR001680 GO:0005515
Cmo15g01249 631 SMART WD40_4 193 234 IPR001680 GO:0005515
Cmo15g01249 631 SMART WD40_4 280 317 IPR001680 GO:0005515
Cmo15g01249 631 SMART WD40_4 349 391 IPR001680 GO:0005515
Cmo15g01249 631 SMART WD40_4 529 568 IPR001680 GO:0005515
Cmo15g01249 631 Pfam WD domain, G-beta repeat 362 391 IPR001680 GO:0005515
Cmo15g01249 631 Pfam WD domain, G-beta repeat 396 436 IPR001680 GO:0005515
Cmo15g01249 631 Pfam WD domain, G-beta repeat 532 568 IPR001680 GO:0005515
Cmo15g01249 631 ProSitePatterns Trp-Asp (WD) repeats signature. 555 569 IPR019775 -
Cmo15g01249 631 PANTHER CELL DIVISION CYCLE 20 CDC20 FIZZY -RELATED 498 578 IPR033010 GO:0010997|GO:0097027|GO:1904668
Cmo15g01249 631 PANTHER CELL DIVISION CYCLE 20 CDC20 FIZZY -RELATED 23 334 IPR033010 GO:0010997|GO:0097027|GO:1904668
Cmo15g01249 631 PANTHER CELL DIVISION CYCLE 20 CDC20 FIZZY -RELATED 364 454 IPR033010 GO:0010997|GO:0097027|GO:1904668
Cmo15g01249 631 SUPERFAMILY WD40 repeat-like 210 568 IPR036322 GO:0005515
Cmo15g01249 631 Pfam Anaphase-promoting complex subunit 4 WD40 domain 247 301 IPR024977 -
Cmo15g01249 631 MobiDBLite consensus disorder prediction 1 31 - -
Cmo15g01249 631 Gene3D - 158 472 IPR015943 GO:0005515
Cmo15g01249 631 PANTHER PROTEIN FIZZY-RELATED 1 23 334 - -
Cmo15g01249 631 ProSiteProfiles Trp-Asp (WD) repeats profile. 366 400 IPR001680 GO:0005515
Cmo15g01249 631 ProSiteProfiles Trp-Asp (WD) repeats profile. 245 286 IPR001680 GO:0005515
Cmo15g01249 631 ProSiteProfiles Trp-Asp (WD) repeats profile. 536 569 IPR001680 GO:0005515
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cmo15g01249 K03364 CDH1, FZR1; cell division cycle 20-like protein 1, cofactor of APC complex - csv:101220762 865.144
       

WGDs- Genes

Select Gene_1 Gene_2 Event_name
Cmo02g01537 Cmo15g01249 CST
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cmo04g02780 Cmo-Chr4:20049393 Cmo15g01249 Cmo-Chr15:8576869 6.06E-175 dispersed
Cmo15g00392 Cmo-Chr15:1801671 Cmo15g01249 Cmo-Chr15:8576869 1.19E-14 dispersed
Cmo15g01249 Cmo-Chr15:8576869 Cmo13g00687 Cmo-Chr13:7079839 8.96E-11 dispersed
Cmo15g01249 Cmo-Chr15:8576869 Cmo02g01537 Cmo-Chr2:8920715 0 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi2g425 . . . . . . . Bma14g00575 . . Cma02g01496 Cma15g01185 Car02g01258 Car15g01073 . . Cpe05g00294 . . . . . . . . . . . . . . . . Cone6ag0735 Cone9ag0739 . Csa05g00338 Chy09g01171 . Blo03g00379 . Bda07g00507 . . Bpe11g00694 . . . Cmo02g01537 Cmo15g01249 . . . . . Cpe13g00188 Bhi12g00333 . . Lac11g2159 Hepe06g1599 . Lcy12g1717 Cla01g00318 Cam01g0328 Cec01g0320 Cco01g0337 Clacu01g0330 Cmu01g0314 Cre09g2197 Lsi09g00323 . . Cme09g01704
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0006983 1 1 1 1 1 1 4 1 1 1 1 1 2 1 1 2 1 2 2 1 1 1 1 1 1 1 1 1 1 1 37
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Cmo15g01249 Cmo_Chr15 FPKM 10.790598 11.320244 15.338719 9.207825 13.743448 7.678955 12.023747 2.324209 2.724504 2.525139