Gene search
Sequence information

Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
---|---|---|---|---|---|---|
Cmo15g01250 | ATGGTGCGAGGCAAGACTGAAATGAAGCGCATAGAGAATGCCACAAGCCGGCAAGTCACGTTTTCAAAGCGCAGAAATGGACTGCTGAAGAAAGCCTTTGAGCTATCAGTTCTGTGCGACGCTGAAGTTGCCCTTATAATCTTCTCTCCAAGAGGCAAACTTTACGAGTTTTCCAATTTCAGTATGAACAAGACAATTGATCGTTATCAGAACAGGACCAAAGATTTGATGTCGAGTAACAACACAGCTGTTGAAGATTTGCAGTTGGAGAAGGAACTCGACTCGTTTACCATCACAAAGAAGTTGGAGCACCTTGAAGTTAGTAAAAGAAAACTGTTGGGAGGTGGGTTGGATTCGTGTTCGATCGACGAGTTGCAGCAGCTCGAAAGACAGCTTGAAAGAAGCTTAAGCAAGATTAGGTCAAGAAAGTATCAAATTTTGAAGGAAGAAATTATGAAGCTGAAGGAAGAGGAGAAACTGTTGCTGGAAGAAAATGCAGCACTGCAGGTGAAGGTCAGAAGAAAATCGTCAAAAAAACGAGAAACGAAGCAGAGATCTGAATCAAAGGAGCAAGACATAATGGATGTGGAAACTGAACTGTTCATAGGACTCCCAGAAAGAAGAACAACCACCAATGGCTTCCTCTAG | 648 | 42.75 | MVRGKTEMKRIENATSRQVTFSKRRNGLLKKAFELSVLCDAEVALIIFSPRGKLYEFSNFSMNKTIDRYQNRTKDLMSSNNTAVEDLQLEKELDSFTITKKLEHLEVSKRKLLGGGLDSCSIDELQQLERQLERSLSKIRSRKYQILKEEIMKLKEEEKLLLEENAALQVKVRRKSSKKRETKQRSESKEQDIMDVETELFIGLPERRTTTNGFL | 215 |
Gff information

Chromosome | Start | End | Strand | Old_gene | Gene | Num |
---|---|---|---|---|---|---|
15 | 8582334 | 8586940 | - | CmoCh15G012500.1 | Cmo15g01250 | 398758 |
Annotation information

Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
---|---|---|---|---|---|---|---|---|
Cmo15g01250 | 215 | SUPERFAMILY | SRF-like | 3 | 83 | IPR036879 | GO:0003677|GO:0046983 | |
Cmo15g01250 | 215 | CDD | MADS_MEF2_like | 3 | 78 | IPR033896 | GO:0000977|GO:0045944 | |
Cmo15g01250 | 215 | Coils | Coil | 122 | 142 | - | - | |
Cmo15g01250 | 215 | Pfam | SRF-type transcription factor (DNA-binding and dimerisation domain) | 10 | 57 | IPR002100 | GO:0003677|GO:0046983 | |
Cmo15g01250 | 215 | Pfam | K-box region | 97 | 172 | IPR002487 | GO:0003700|GO:0005634|GO:0006355 | |
Cmo15g01250 | 215 | ProSitePatterns | MADS-box domain signature. | 3 | 57 | IPR002100 | GO:0003677|GO:0046983 | |
Cmo15g01250 | 215 | SMART | madsneu2 | 1 | 60 | IPR002100 | GO:0003677|GO:0046983 | |
Cmo15g01250 | 215 | Coils | Coil | 179 | 199 | - | - | |
Cmo15g01250 | 215 | PRINTS | MADS domain signature | 3 | 23 | IPR002100 | GO:0003677|GO:0046983 | |
Cmo15g01250 | 215 | PRINTS | MADS domain signature | 23 | 38 | IPR002100 | GO:0003677|GO:0046983 | |
Cmo15g01250 | 215 | PRINTS | MADS domain signature | 38 | 59 | IPR002100 | GO:0003677|GO:0046983 | |
Cmo15g01250 | 215 | Gene3D | - | 14 | 92 | IPR036879 | GO:0003677|GO:0046983 | |
Cmo15g01250 | 215 | ProSiteProfiles | K-box domain profile. | 88 | 178 | IPR002487 | GO:0003700|GO:0005634|GO:0006355 | |
Cmo15g01250 | 215 | ProSiteProfiles | MADS-box domain profile. | 1 | 61 | IPR002100 | GO:0003677|GO:0046983 | |
Cmo15g01250 | 215 | PANTHER | MADS BOX PROTEIN | 1 | 206 | - | - | |
Cmo15g01250 | 215 | Coils | Coil | 144 | 171 | - | - | |
Cmo15g01250 | 215 | PANTHER | MADS-BOX PROTEIN SOC1 | 1 | 206 | - | - |
Event-related genes

Select | Gene_1 | Gene_2 | Event_name |
---|---|---|---|
Cmo06g01143 | Cmo15g01250 | CCT | |
Cmo02g01534 | Cmo15g01250 | CST |
Duplication type information

Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
---|---|---|---|---|---|---|
Cmo15g01250 | Cmo-Chr15:8582334 | Cmo03g01352 | Cmo-Chr3:9999265 | 6.78E-47 | dispersed | |
Cmo14g02060 | Cmo-Chr14:15036993 | Cmo15g01250 | Cmo-Chr15:8582334 | 2.00E-58 | wgd | |
Cmo15g01250 | Cmo-Chr15:8582334 | Cmo02g01534 | Cmo-Chr2:8913207 | 1.97E-100 | wgd | |
Cmo15g01250 | Cmo-Chr15:8582334 | Cmo06g01143 | Cmo-Chr6:8774826 | 9.77E-65 | wgd |
Transcription factors information

Select | Gene | Hmm_acc | Hmm_name | Score | E-value | Regulatory Factors | Family |
---|---|---|---|---|---|---|---|
11211 | PF01486 | K-box | 3.40E-21 | No_clan | Cmo | TF |
Pathway information

Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
---|---|---|---|---|---|---|
Cmo15g01250 | - | - | csv:101220518 | 300.827 |