Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cmo15g01250 ATGGTGCGAGGCAAGACTGAAATGAAGCGCATAGAGAATGCCACAAGCCGGCAAGTCACGTTTTCAAAGCGCAGAAATGGACTGCTGAAGAAAGCCTTTGAGCTATCAGTTCTGTGCGACGCTGAAGTTGCCCTTATAATCTTCTCTCCAAGAGGCAAACTTTACGAGTTTTCCAATTTCAGTATGAACAAGACAATTGATCGTTATCAGAACAGGACCAAAGATTTGATGTCGAGTAACAACACAGCTGTTGAAGATTTGCAGTTGGAGAAGGAACTCGACTCGTTTACCATCACAAAGAAGTTGGAGCACCTTGAAGTTAGTAAAAGAAAACTGTTGGGAGGTGGGTTGGATTCGTGTTCGATCGACGAGTTGCAGCAGCTCGAAAGACAGCTTGAAAGAAGCTTAAGCAAGATTAGGTCAAGAAAGTATCAAATTTTGAAGGAAGAAATTATGAAGCTGAAGGAAGAGGAGAAACTGTTGCTGGAAGAAAATGCAGCACTGCAGGTGAAGGTCAGAAGAAAATCGTCAAAAAAACGAGAAACGAAGCAGAGATCTGAATCAAAGGAGCAAGACATAATGGATGTGGAAACTGAACTGTTCATAGGACTCCCAGAAAGAAGAACAACCACCAATGGCTTCCTCTAG 648 42.75 MVRGKTEMKRIENATSRQVTFSKRRNGLLKKAFELSVLCDAEVALIIFSPRGKLYEFSNFSMNKTIDRYQNRTKDLMSSNNTAVEDLQLEKELDSFTITKKLEHLEVSKRKLLGGGLDSCSIDELQQLERQLERSLSKIRSRKYQILKEEIMKLKEEEKLLLEENAALQVKVRRKSSKKRETKQRSESKEQDIMDVETELFIGLPERRTTTNGFL 215
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
15 8582334 8586940 - CmoCh15G012500.1 Cmo15g01250 398758
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cmo15g01250 215 SUPERFAMILY SRF-like 3 83 IPR036879 GO:0003677|GO:0046983
Cmo15g01250 215 CDD MADS_MEF2_like 3 78 IPR033896 GO:0000977|GO:0045944
Cmo15g01250 215 Coils Coil 122 142 - -
Cmo15g01250 215 Pfam SRF-type transcription factor (DNA-binding and dimerisation domain) 10 57 IPR002100 GO:0003677|GO:0046983
Cmo15g01250 215 Pfam K-box region 97 172 IPR002487 GO:0003700|GO:0005634|GO:0006355
Cmo15g01250 215 ProSitePatterns MADS-box domain signature. 3 57 IPR002100 GO:0003677|GO:0046983
Cmo15g01250 215 SMART madsneu2 1 60 IPR002100 GO:0003677|GO:0046983
Cmo15g01250 215 Coils Coil 179 199 - -
Cmo15g01250 215 PRINTS MADS domain signature 3 23 IPR002100 GO:0003677|GO:0046983
Cmo15g01250 215 PRINTS MADS domain signature 23 38 IPR002100 GO:0003677|GO:0046983
Cmo15g01250 215 PRINTS MADS domain signature 38 59 IPR002100 GO:0003677|GO:0046983
Cmo15g01250 215 Gene3D - 14 92 IPR036879 GO:0003677|GO:0046983
Cmo15g01250 215 ProSiteProfiles K-box domain profile. 88 178 IPR002487 GO:0003700|GO:0005634|GO:0006355
Cmo15g01250 215 ProSiteProfiles MADS-box domain profile. 1 61 IPR002100 GO:0003677|GO:0046983
Cmo15g01250 215 PANTHER MADS BOX PROTEIN 1 206 - -
Cmo15g01250 215 Coils Coil 144 171 - -
Cmo15g01250 215 PANTHER MADS-BOX PROTEIN SOC1 1 206 - -
       

Event-related genes

Select Gene_1 Gene_2 Event_name
Cmo06g01143 Cmo15g01250 CCT
Cmo02g01534 Cmo15g01250 CST
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cmo15g01250 Cmo-Chr15:8582334 Cmo03g01352 Cmo-Chr3:9999265 6.78E-47 dispersed
Cmo14g02060 Cmo-Chr14:15036993 Cmo15g01250 Cmo-Chr15:8582334 2.00E-58 wgd
Cmo15g01250 Cmo-Chr15:8582334 Cmo02g01534 Cmo-Chr2:8913207 1.97E-100 wgd
Cmo15g01250 Cmo-Chr15:8582334 Cmo06g01143 Cmo-Chr6:8774826 9.77E-65 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
11211 PF01486 K-box 3.40E-21 No_clan Cmo TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cmo15g01250 - - csv:101220518 300.827