Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cmo15g01252 ATGCAAGAAGCTGGGTTGGGAATCATGAATGGTGGTGCGTCTAGCGGTGATGTTTTGGTTTCCGGTGAGGGGGTTCATAATGCCCAACTCAAGGCGGAGATTGCTACTCATCCACTTTATGAGCAGCTTCTTTCCGCTCATGTTGCTTGTCTTCGTGTTGCTACGCCGATTGATAAGCTTCCGATGATCGATGCTCAGCTTTCTCAATCGCATCATGTTTTGCGCTCTTATGCTTCCTCTCTTCAAAATGCTCATTCCTTGTCGCCTCATGACCGCCAGGAACTCGATAATTTTCTGGCTCAGTATATGATCGTTTTGTTCTCTTTCAAAGATCAGCTTCAACAGCATGTGAGATTTCACGCAGTGGAGGCTGTTATGGCCTGCCGTGAAATTGAAAGTACTCTACAAGCTCTAACAGGCACTGGTTTAACAATGTCCGACAATGACGACGATGATGTTCCAATGGACTTCTCACTCGATCAATCTAGCACTGATGCACACGACATGATGGGGTTCGGACCGCTGCTTCCGACCGAATCCGAAAGGTCGTTAATGGAGAGGGTTCGACAAGAACTAAAGATTGAGCTGAAACAGGGTTTCAAGTCAAGAATTGAAGATGTGAGAGAGGAAATATTGAGAAAAAGAAGGGCAGGGAAGCTACCTGGGGATACAACTACAGTTTTGAAGAACTGGTGGCAGCAACATTCTAAGTGGCCTTACCCAACTGAAGACGACAAGTCGATGCTGGTGGAGGAGACGGGTTTACAGCTGAAACAAATAAACAATTGGTTCATCAACCAAAGGAAGAGAAACTGGCACAGCAACACTCAGTCAGTGACATTCTTGAAGTCCAAGCGCAAGAGATAA 867 46.02 MQEAGLGIMNGGASSGDVLVSGEGVHNAQLKAEIATHPLYEQLLSAHVACLRVATPIDKLPMIDAQLSQSHHVLRSYASSLQNAHSLSPHDRQELDNFLAQYMIVLFSFKDQLQQHVRFHAVEAVMACREIESTLQALTGTGLTMSDNDDDDVPMDFSLDQSSTDAHDMMGFGPLLPTESERSLMERVRQELKIELKQGFKSRIEDVREEILRKRRAGKLPGDTTTVLKNWWQQHSKWPYPTEDDKSMLVEETGLQLKQINNWFINQRKRNWHSNTQSVTFLKSKRKR 288
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
15 8604183 8607980 + CmoCh15G012520.1 Cmo15g01252 398760
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cmo15g01252 288 SMART KNOX2_2 85 140 IPR005541 GO:0003677|GO:0005634
Cmo15g01252 288 Pfam Homeobox KN domain 231 270 IPR008422 GO:0003677|GO:0006355
Cmo15g01252 288 ProSiteProfiles 'Homeobox' domain profile. 211 274 IPR001356 GO:0003677
Cmo15g01252 288 Gene3D - 210 280 - -
Cmo15g01252 288 SMART HOX_1 213 278 IPR001356 GO:0003677
Cmo15g01252 288 Pfam KNOX2 domain 88 139 IPR005541 GO:0003677|GO:0005634
Cmo15g01252 288 PANTHER HOMEOBOX PROTEIN KNOTTED-1-LIKE 7 2 288 - -
Cmo15g01252 288 SMART KNOX1_2 28 72 IPR005540 GO:0003677|GO:0005634
Cmo15g01252 288 SUPERFAMILY Homeodomain-like 213 277 IPR009057 -
Cmo15g01252 288 Pfam KNOX1 domain 30 71 IPR005540 GO:0003677|GO:0005634
Cmo15g01252 288 CDD homeodomain 214 275 IPR001356 GO:0003677
Cmo15g01252 288 ProSiteProfiles ELK domain profile. 191 211 IPR005539 GO:0003677
Cmo15g01252 288 PANTHER HOMEOBOX PROTEIN TRANSCRIPTION FACTORS 2 288 - -
       

Event-related genes

Select Gene_1 Gene_2 Event_name
Cmo02g01531 Cmo15g01252 CST
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cmo05g00368 Cmo-Chr5:1662445 Cmo15g01252 Cmo-Chr15:8604183 7.50E-121 dispersed
Cmo09g00434 Cmo-Chr9:1954115 Cmo15g01252 Cmo-Chr15:8604183 3.48E-129 dispersed
Cmo12g00302 Cmo-Chr12:1887315 Cmo15g01252 Cmo-Chr15:8604183 1.76E-116 dispersed
Cmo15g01252 Cmo-Chr15:8604183 Cmo09g00320 Cmo-Chr9:1391789 1.43E-29 dispersed
Cmo15g01252 Cmo-Chr15:8604183 Cmo02g01531 Cmo-Chr2:8896584 8.68E-139 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
11212 PF03791 KNOX2 5.90E-17 No_clan Cmo TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cmo15g01252 - - csv:101206054 504.982