Gene search
Sequence information

Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
---|---|---|---|---|---|---|
Cmo15g01252 | ATGCAAGAAGCTGGGTTGGGAATCATGAATGGTGGTGCGTCTAGCGGTGATGTTTTGGTTTCCGGTGAGGGGGTTCATAATGCCCAACTCAAGGCGGAGATTGCTACTCATCCACTTTATGAGCAGCTTCTTTCCGCTCATGTTGCTTGTCTTCGTGTTGCTACGCCGATTGATAAGCTTCCGATGATCGATGCTCAGCTTTCTCAATCGCATCATGTTTTGCGCTCTTATGCTTCCTCTCTTCAAAATGCTCATTCCTTGTCGCCTCATGACCGCCAGGAACTCGATAATTTTCTGGCTCAGTATATGATCGTTTTGTTCTCTTTCAAAGATCAGCTTCAACAGCATGTGAGATTTCACGCAGTGGAGGCTGTTATGGCCTGCCGTGAAATTGAAAGTACTCTACAAGCTCTAACAGGCACTGGTTTAACAATGTCCGACAATGACGACGATGATGTTCCAATGGACTTCTCACTCGATCAATCTAGCACTGATGCACACGACATGATGGGGTTCGGACCGCTGCTTCCGACCGAATCCGAAAGGTCGTTAATGGAGAGGGTTCGACAAGAACTAAAGATTGAGCTGAAACAGGGTTTCAAGTCAAGAATTGAAGATGTGAGAGAGGAAATATTGAGAAAAAGAAGGGCAGGGAAGCTACCTGGGGATACAACTACAGTTTTGAAGAACTGGTGGCAGCAACATTCTAAGTGGCCTTACCCAACTGAAGACGACAAGTCGATGCTGGTGGAGGAGACGGGTTTACAGCTGAAACAAATAAACAATTGGTTCATCAACCAAAGGAAGAGAAACTGGCACAGCAACACTCAGTCAGTGACATTCTTGAAGTCCAAGCGCAAGAGATAA | 867 | 46.02 | MQEAGLGIMNGGASSGDVLVSGEGVHNAQLKAEIATHPLYEQLLSAHVACLRVATPIDKLPMIDAQLSQSHHVLRSYASSLQNAHSLSPHDRQELDNFLAQYMIVLFSFKDQLQQHVRFHAVEAVMACREIESTLQALTGTGLTMSDNDDDDVPMDFSLDQSSTDAHDMMGFGPLLPTESERSLMERVRQELKIELKQGFKSRIEDVREEILRKRRAGKLPGDTTTVLKNWWQQHSKWPYPTEDDKSMLVEETGLQLKQINNWFINQRKRNWHSNTQSVTFLKSKRKR | 288 |
Gff information

Chromosome | Start | End | Strand | Old_gene | Gene | Num |
---|---|---|---|---|---|---|
15 | 8604183 | 8607980 | + | CmoCh15G012520.1 | Cmo15g01252 | 398760 |
Annotation information

Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
---|---|---|---|---|---|---|---|---|
Cmo15g01252 | 288 | SMART | KNOX2_2 | 85 | 140 | IPR005541 | GO:0003677|GO:0005634 | |
Cmo15g01252 | 288 | Pfam | Homeobox KN domain | 231 | 270 | IPR008422 | GO:0003677|GO:0006355 | |
Cmo15g01252 | 288 | ProSiteProfiles | 'Homeobox' domain profile. | 211 | 274 | IPR001356 | GO:0003677 | |
Cmo15g01252 | 288 | Gene3D | - | 210 | 280 | - | - | |
Cmo15g01252 | 288 | SMART | HOX_1 | 213 | 278 | IPR001356 | GO:0003677 | |
Cmo15g01252 | 288 | Pfam | KNOX2 domain | 88 | 139 | IPR005541 | GO:0003677|GO:0005634 | |
Cmo15g01252 | 288 | PANTHER | HOMEOBOX PROTEIN KNOTTED-1-LIKE 7 | 2 | 288 | - | - | |
Cmo15g01252 | 288 | SMART | KNOX1_2 | 28 | 72 | IPR005540 | GO:0003677|GO:0005634 | |
Cmo15g01252 | 288 | SUPERFAMILY | Homeodomain-like | 213 | 277 | IPR009057 | - | |
Cmo15g01252 | 288 | Pfam | KNOX1 domain | 30 | 71 | IPR005540 | GO:0003677|GO:0005634 | |
Cmo15g01252 | 288 | CDD | homeodomain | 214 | 275 | IPR001356 | GO:0003677 | |
Cmo15g01252 | 288 | ProSiteProfiles | ELK domain profile. | 191 | 211 | IPR005539 | GO:0003677 | |
Cmo15g01252 | 288 | PANTHER | HOMEOBOX PROTEIN TRANSCRIPTION FACTORS | 2 | 288 | - | - |
Event-related genes

Select | Gene_1 | Gene_2 | Event_name |
---|---|---|---|
Cmo02g01531 | Cmo15g01252 | CST |
Duplication type information

Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
---|---|---|---|---|---|---|
Cmo05g00368 | Cmo-Chr5:1662445 | Cmo15g01252 | Cmo-Chr15:8604183 | 7.50E-121 | dispersed | |
Cmo09g00434 | Cmo-Chr9:1954115 | Cmo15g01252 | Cmo-Chr15:8604183 | 3.48E-129 | dispersed | |
Cmo12g00302 | Cmo-Chr12:1887315 | Cmo15g01252 | Cmo-Chr15:8604183 | 1.76E-116 | dispersed | |
Cmo15g01252 | Cmo-Chr15:8604183 | Cmo09g00320 | Cmo-Chr9:1391789 | 1.43E-29 | dispersed | |
Cmo15g01252 | Cmo-Chr15:8604183 | Cmo02g01531 | Cmo-Chr2:8896584 | 8.68E-139 | wgd |
Transcription factors information

Select | Gene | Hmm_acc | Hmm_name | Score | E-value | Regulatory Factors | Family |
---|---|---|---|---|---|---|---|
11212 | PF03791 | KNOX2 | 5.90E-17 | No_clan | Cmo | TF |
Pathway information

Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
---|---|---|---|---|---|---|
Cmo15g01252 | - | - | csv:101206054 | 504.982 |