Gene search
Sequence information

Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
---|---|---|---|---|---|---|
Cmo15g01261 | ATGGATTTATTCTCTCAATTTTCTGATCCTCTTCCTTATTATGGTAATTGTAATTACAATTCGGAATCGTCGTCGGCGTTTTTTGACGCCGGAACGCATCCGCTCACGGTGGCTACCTCCGACGAGGAAGTGATACTGGCGTCGAACCAGCCCAAGCGCCCGGCGGGTCGGCGGGTTTTTAAAGAGACGAGGCATCCGGTCTACAGAGGAGTACGTCGGAGGAATAACGACAAATGGGTTTGTGAGATGAGGGAGCCGAATAAGAAGACCAGGATTTGGCTCGGGACTTACCCAACGGCTGAGATGGCGGCGCGTGCACACGATGTGGCTGCACTCGCGTTGAGAGGGAAGTCGGCTTGTCTCAATTTTGCTGACTCGGCATGGCGGTTTCCGATTCCGGCTAGTGATGACCCGTCTGTGATCCGAGCGGCAGCAGCGATGGCGGCGAATGAATGCAAGGATGAGGAATGTAATGCGTGTCGGGAAGAGGACGACGTCGTTTTGTGTCAACCCACGGCGAGTCCTGACCAGCCGGTTTATGTCGACGATGAGGCTTTGTCGAATATGCCAATGTTGCTTGCCAACATGGCGGAAGGACTTCTTCTTTCTCCTCCGTCTTTTTGTGTAAATGATGACGTGGAGTGGGATGATGTGGCCATGAGTCATGACGTGTCATTGTGGAACTTTTAG | 690 | 52.61 | MDLFSQFSDPLPYYGNCNYNSESSSAFFDAGTHPLTVATSDEEVILASNQPKRPAGRRVFKETRHPVYRGVRRRNNDKWVCEMREPNKKTRIWLGTYPTAEMAARAHDVAALALRGKSACLNFADSAWRFPIPASDDPSVIRAAAAMAANECKDEECNACREEDDVVLCQPTASPDQPVYVDDEALSNMPMLLANMAEGLLLSPPSFCVNDDVEWDDVAMSHDVSLWNF | 229 |
Gff information

Chromosome | Start | End | Strand | Old_gene | Gene | Num |
---|---|---|---|---|---|---|
15 | 8654286 | 8654975 | - | CmoCh15G012610.1 | Cmo15g01261 | 398769 |
Annotation information

Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
---|---|---|---|---|---|---|---|---|
Cmo15g01261 | 229 | Gene3D | AP2/ERF domain | 67 | 125 | IPR036955 | GO:0003700|GO:0006355 | |
Cmo15g01261 | 229 | PRINTS | Ethylene responsive element binding protein signature | 68 | 79 | IPR001471 | GO:0003700|GO:0006355 | |
Cmo15g01261 | 229 | PRINTS | Ethylene responsive element binding protein signature | 90 | 106 | IPR001471 | GO:0003700|GO:0006355 | |
Cmo15g01261 | 229 | PANTHER | DEHYDRATION-RESPONSIVE ELEMENT-BINDING PROTEIN 1D | 1 | 229 | IPR045277 | GO:0003700 | |
Cmo15g01261 | 229 | SMART | rav1_2 | 67 | 130 | IPR001471 | GO:0003700|GO:0006355 | |
Cmo15g01261 | 229 | CDD | AP2 | 68 | 126 | IPR001471 | GO:0003700|GO:0006355 | |
Cmo15g01261 | 229 | ProSiteProfiles | AP2/ERF domain profile. | 67 | 124 | IPR001471 | GO:0003700|GO:0006355 | |
Cmo15g01261 | 229 | Pfam | AP2 domain | 66 | 116 | IPR001471 | GO:0003700|GO:0006355 | |
Cmo15g01261 | 229 | SUPERFAMILY | DNA-binding domain | 67 | 126 | IPR016177 | GO:0003677 | |
Cmo15g01261 | 229 | PANTHER | DEHYDRATION-RESPONSIVE ELEMENT-BINDING PROTEIN 1F | 1 | 229 | - | - |
Event-related genes

Select | Gene_1 | Gene_2 | Event_name |
---|---|---|---|
Cmo02g01524 | Cmo15g01261 | CST |
Duplication type information

Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
---|---|---|---|---|---|---|
Cmo02g01524 | Cmo-Chr2:8865848 | Cmo15g01261 | Cmo-Chr15:8654286 | 2.33E-32 | dispersed | |
Cmo06g00454 | Cmo-Chr6:2168177 | Cmo15g01261 | Cmo-Chr15:8654286 | 8.73E-42 | dispersed | |
Cmo14g00277 | Cmo-Chr14:1253901 | Cmo15g01261 | Cmo-Chr15:8654286 | 1.92E-37 | dispersed | |
Cmo15g01261 | Cmo-Chr15:8654286 | Cmo16g01051 | Cmo-Chr16:7356312 | 2.31E-32 | dispersed | |
Cmo15g01261 | Cmo-Chr15:8654286 | Cmo15g01262 | Cmo-Chr15:8661091 | 7.27E-36 | tandem | |
Cmo15g01261 | Cmo-Chr15:8654286 | Cmo16g00158 | Cmo-Chr16:718294 | 1.03E-66 | wgd | |
Cmo15g01261 | Cmo-Chr15:8654286 | Cmo18g01239 | Cmo-Chr18:12227522 | 1.20E-34 | wgd | |
Cmo15g01261 | Cmo-Chr15:8654286 | Cmo02g01523 | Cmo-Chr2:8862933 | 2.47E-37 | wgd |
Transcription factors information

Select | Gene | Hmm_acc | Hmm_name | Score | E-value | Regulatory Factors | Family |
---|---|---|---|---|---|---|---|
11213 | PF00847 | AP2 | 1.10E-14 | CL0081 | Cmo | TF |
Pathway information

Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
---|---|---|---|---|---|---|
Cmo15g01261 | - | - | bhj:120092445 | 394.815 |