Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cmo15g01261 ATGGATTTATTCTCTCAATTTTCTGATCCTCTTCCTTATTATGGTAATTGTAATTACAATTCGGAATCGTCGTCGGCGTTTTTTGACGCCGGAACGCATCCGCTCACGGTGGCTACCTCCGACGAGGAAGTGATACTGGCGTCGAACCAGCCCAAGCGCCCGGCGGGTCGGCGGGTTTTTAAAGAGACGAGGCATCCGGTCTACAGAGGAGTACGTCGGAGGAATAACGACAAATGGGTTTGTGAGATGAGGGAGCCGAATAAGAAGACCAGGATTTGGCTCGGGACTTACCCAACGGCTGAGATGGCGGCGCGTGCACACGATGTGGCTGCACTCGCGTTGAGAGGGAAGTCGGCTTGTCTCAATTTTGCTGACTCGGCATGGCGGTTTCCGATTCCGGCTAGTGATGACCCGTCTGTGATCCGAGCGGCAGCAGCGATGGCGGCGAATGAATGCAAGGATGAGGAATGTAATGCGTGTCGGGAAGAGGACGACGTCGTTTTGTGTCAACCCACGGCGAGTCCTGACCAGCCGGTTTATGTCGACGATGAGGCTTTGTCGAATATGCCAATGTTGCTTGCCAACATGGCGGAAGGACTTCTTCTTTCTCCTCCGTCTTTTTGTGTAAATGATGACGTGGAGTGGGATGATGTGGCCATGAGTCATGACGTGTCATTGTGGAACTTTTAG 690 52.61 MDLFSQFSDPLPYYGNCNYNSESSSAFFDAGTHPLTVATSDEEVILASNQPKRPAGRRVFKETRHPVYRGVRRRNNDKWVCEMREPNKKTRIWLGTYPTAEMAARAHDVAALALRGKSACLNFADSAWRFPIPASDDPSVIRAAAAMAANECKDEECNACREEDDVVLCQPTASPDQPVYVDDEALSNMPMLLANMAEGLLLSPPSFCVNDDVEWDDVAMSHDVSLWNF 229
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
15 8654286 8654975 - CmoCh15G012610.1 Cmo15g01261 398769
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cmo15g01261 229 Gene3D AP2/ERF domain 67 125 IPR036955 GO:0003700|GO:0006355
Cmo15g01261 229 PRINTS Ethylene responsive element binding protein signature 68 79 IPR001471 GO:0003700|GO:0006355
Cmo15g01261 229 PRINTS Ethylene responsive element binding protein signature 90 106 IPR001471 GO:0003700|GO:0006355
Cmo15g01261 229 PANTHER DEHYDRATION-RESPONSIVE ELEMENT-BINDING PROTEIN 1D 1 229 IPR045277 GO:0003700
Cmo15g01261 229 SMART rav1_2 67 130 IPR001471 GO:0003700|GO:0006355
Cmo15g01261 229 CDD AP2 68 126 IPR001471 GO:0003700|GO:0006355
Cmo15g01261 229 ProSiteProfiles AP2/ERF domain profile. 67 124 IPR001471 GO:0003700|GO:0006355
Cmo15g01261 229 Pfam AP2 domain 66 116 IPR001471 GO:0003700|GO:0006355
Cmo15g01261 229 SUPERFAMILY DNA-binding domain 67 126 IPR016177 GO:0003677
Cmo15g01261 229 PANTHER DEHYDRATION-RESPONSIVE ELEMENT-BINDING PROTEIN 1F 1 229 - -
       

Event-related genes

Select Gene_1 Gene_2 Event_name
Cmo02g01524 Cmo15g01261 CST
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cmo02g01524 Cmo-Chr2:8865848 Cmo15g01261 Cmo-Chr15:8654286 2.33E-32 dispersed
Cmo06g00454 Cmo-Chr6:2168177 Cmo15g01261 Cmo-Chr15:8654286 8.73E-42 dispersed
Cmo14g00277 Cmo-Chr14:1253901 Cmo15g01261 Cmo-Chr15:8654286 1.92E-37 dispersed
Cmo15g01261 Cmo-Chr15:8654286 Cmo16g01051 Cmo-Chr16:7356312 2.31E-32 dispersed
Cmo15g01261 Cmo-Chr15:8654286 Cmo15g01262 Cmo-Chr15:8661091 7.27E-36 tandem
Cmo15g01261 Cmo-Chr15:8654286 Cmo16g00158 Cmo-Chr16:718294 1.03E-66 wgd
Cmo15g01261 Cmo-Chr15:8654286 Cmo18g01239 Cmo-Chr18:12227522 1.20E-34 wgd
Cmo15g01261 Cmo-Chr15:8654286 Cmo02g01523 Cmo-Chr2:8862933 2.47E-37 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
11213 PF00847 AP2 1.10E-14 CL0081 Cmo TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cmo15g01261 - - bhj:120092445 394.815