Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cmo15g01262 ATGGGTGACCAAAAGCTCCCAATGAACGAGCTGAGCCAAACACCCATTGACCCTCTTGTTCCTTCTGTCCCCACATCCCAAAATCCTAATCCAAATCCAAATCCAAACACCCAAGTGGCTGAACCACGAGCTTTGGTTCAAGAACTGCCGCCGCCGCCGCCGCCGCCACCACCATCTTCCATGGCTTCTTCAATTACTTCTTCTTCTTCAACTAAGAAGCATTCTTTGTATAGAGGAATCCGGTGCCGGAGCGGCAAATGGGTGTCGGAGATTCGAGAGCCACGTAAGACGAAGCGGATATGGCTCGGTACATTTCCGACGCCTGAGATGGCTGCTGCTGCTTACGACGTCGCTGCACTTGCTCTTCGAGGTGACGACGCTGTCCTTAACTTCCCTGCCTCCATTCCCTCCTACCCTATTCCTGCCTCGACTTCTCCTATCGATATACGCGCTGCTGCTTCTACTGCTGCTGCTGCTTCCGCTGCTAATACGTTGAAGAAAGTTGAAGGCGCTTGTAGTAATATTGATGATACGAAGATTATTACGGTTGAAGATTGTAGCAATACAACGTTGTTGAAAACGGAGGAGTTTGTGGATGAAGAAGAGATTTTTGGTATGCCGAGTTTGCTGGCTGATATGGCTGAGGGGATGATGGTGTCACCGCCGAGAATAAACTCGCCGCCACCGTCCGATGACTCGATCGAGAATTCAGATGGAACGGAAAGCTTATGGAGCTACTTGTGA 744 50.27 MGDQKLPMNELSQTPIDPLVPSVPTSQNPNPNPNPNTQVAEPRALVQELPPPPPPPPPSSMASSITSSSSTKKHSLYRGIRCRSGKWVSEIREPRKTKRIWLGTFPTPEMAAAAYDVAALALRGDDAVLNFPASIPSYPIPASTSPIDIRAAASTAAAASAANTLKKVEGACSNIDDTKIITVEDCSNTTLLKTEEFVDEEEIFGMPSLLADMAEGMMVSPPRINSPPPSDDSIENSDGTESLWSYL 247
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
15 8661091 8661834 - CmoCh15G012620.1 Cmo15g01262 398770
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cmo15g01262 247 PANTHER ETHYLENE RESPONSE FACTOR 67 246 - -
Cmo15g01262 247 MobiDBLite consensus disorder prediction 46 61 - -
Cmo15g01262 247 MobiDBLite consensus disorder prediction 229 247 - -
Cmo15g01262 247 SUPERFAMILY DNA-binding domain 75 134 IPR016177 GO:0003677
Cmo15g01262 247 MobiDBLite consensus disorder prediction 1 77 - -
Cmo15g01262 247 PANTHER ETHYLENE-RESPONSIVE TRANSCRIPTION FACTOR ERF042-RELATED 67 246 - -
Cmo15g01262 247 MobiDBLite consensus disorder prediction 7 21 - -
Cmo15g01262 247 MobiDBLite consensus disorder prediction 219 247 - -
Cmo15g01262 247 SMART rav1_2 76 138 IPR001471 GO:0003700|GO:0006355
Cmo15g01262 247 CDD AP2 77 134 IPR001471 GO:0003700|GO:0006355
Cmo15g01262 247 Gene3D AP2/ERF domain 76 134 IPR036955 GO:0003700|GO:0006355
Cmo15g01262 247 ProSiteProfiles AP2/ERF domain profile. 76 132 IPR001471 GO:0003700|GO:0006355
Cmo15g01262 247 Pfam AP2 domain 76 124 IPR001471 GO:0003700|GO:0006355
Cmo15g01262 247 PRINTS Ethylene responsive element binding protein signature 77 88 IPR001471 GO:0003700|GO:0006355
Cmo15g01262 247 PRINTS Ethylene responsive element binding protein signature 114 134 IPR001471 GO:0003700|GO:0006355
       

Event-related genes

Select Gene_1 Gene_2 Event_name
Cmo15g01262 Cmo18g01239 CCT
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cmo02g01523 Cmo-Chr2:8862933 Cmo15g01262 Cmo-Chr15:8661091 1.23E-69 dispersed
Cmo15g01262 Cmo-Chr15:8661091 Cmo16g01051 Cmo-Chr16:7356312 1.36E-53 dispersed
Cmo15g01261 Cmo-Chr15:8654286 Cmo15g01262 Cmo-Chr15:8661091 7.27E-36 tandem
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
11214 PF00847 AP2 3.00E-11 CL0081 Cmo TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cmo15g01262 - - cmax:111491416 250.751