Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cmo15g01271 ATGATGAAGACCAAGACGAGGATGATAGTTGTGAATATTTGTTTTCTTCTTTTATCTCTTCTTTCTTTTTGTTTCCATGTCCATGCGGCTATCTTTGAAGTACGCAACAATTGTCTCTTCACTGTTTGGGCTGCCGTAGTGCCAGGCGACGGACGACAGCTTAATCAAACAGATGTTTGGACACTCGAAATGAAACCCGACATTAAGGGTGCTCGTATTTGGGCTCGAACCAACTGCAACTTCGATGCATCGGGTCGTGGTAGATGTGAGACTGGTGACTGTGGTGGCCTCCTCCAGTGCCAAGATTACGGTACTCCGCCGAACACCCTCGCAGAATATTTATCATACGAATATGATATCACGAACTTGGAGATGGGTGATATTTCTCTCATCGATGGATTTAATGTTCCGATAGAGTTCAGCCCCACTTCTAGCAAATGCTCTGGCGGCAGTATCCGCCTATTAAATTATCCTCCCATTCAAAAGCTAAGCTGCACAGCGGACATCAACCGACAGTGCCCAAAGGAGTTGAGGGCTCTTGGAGGCTGCAACAATCCTTGCACCGTGTTCGGTGGCGATCGATACTGCTGCACTGTCCCGGACAGCAGCTGTGGGTCGACAAGTTACTCTAGATTCTTCAAGAATTTGTGCCCAAATGCGTACAGTTACTCAGAAGACATTGCCACTCATGAACCAACTATAAGTATACAGTCGTCTTCTGCCCTTAGAACCTTACAATGTATAAACCAACACTTTGCTCCGAACAAGTAA 771 46.17 MMKTKTRMIVVNICFLLLSLLSFCFHVHAAIFEVRNNCLFTVWAAVVPGDGRQLNQTDVWTLEMKPDIKGARIWARTNCNFDASGRGRCETGDCGGLLQCQDYGTPPNTLAEYLSYEYDITNLEMGDISLIDGFNVPIEFSPTSSKCSGGSIRLLNYPPIQKLSCTADINRQCPKELRALGGCNNPCTVFGGDRYCCTVPDSSCGSTSYSRFFKNLCPNAYSYSEDIATHEPTISIQSSSALRTLQCINQHFAPNK 256
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
15 8700802 8701876 + CmoCh15G012710.1 Cmo15g01271 398779

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cmo15g01271 256 SUPERFAMILY Osmotin, thaumatin-like protein 30 233 IPR037176 -
Cmo15g01271 256 SMART tha2 32 234 IPR001938 -
Cmo15g01271 256 Pfam Thaumatin family 36 234 IPR001938 -
Cmo15g01271 256 PANTHER PROTEIN P21 11 231 - -
Cmo15g01271 256 Gene3D Thaumatin 29 248 IPR037176 -
Cmo15g01271 256 PANTHER OS03G0233200 PROTEIN 11 231 IPR001938 -
Cmo15g01271 256 ProSitePatterns Thaumatin family signature. 85 100 IPR017949 -
Cmo15g01271 256 PRINTS Pathogenesis-related protein signature 72 83 IPR001938 -
Cmo15g01271 256 PRINTS Pathogenesis-related protein signature 85 114 IPR001938 -
Cmo15g01271 256 PRINTS Pathogenesis-related protein signature 31 43 IPR001938 -
Cmo15g01271 256 PRINTS Pathogenesis-related protein signature 50 59 IPR001938 -
Cmo15g01271 256 ProSiteProfiles Thaumatin family profile. 29 247 IPR001938 -
Cmo15g01271 256 PIRSF PR5 1 248 IPR001938 -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cmo15g01271 - - - cmos:111430220 400.208
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cmo15g01271 Cmo-Chr15:8700802 Cmo15g01274 Cmo-Chr15:8711302 1.43E-88 dispersed
Cmo15g01270 Cmo-Chr15:8697903 Cmo15g01271 Cmo-Chr15:8700802 4.31E-102 tandem
Cmo15g01271 Cmo-Chr15:8700802 Cmo15g01272 Cmo-Chr15:8705503 5.04E-72 tandem
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi2g392 . . . . . . . . . . . Cma15g01205 . . . . . . . . . . . . . . . . . . . . . . . . Csa05g00315 . . . . . . . . . . . . Cmo15g01271 . . . . . . . . . . . . . . . . . . . . Lsi09g00295 . . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0000769 1 3 0 2 2 1 3 4 2 3 2 2 6 4 3 7 2 3 2 3 3 4 5 2 6 4 5 3 2 3 92
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Cmo15g01271 Cmo_Chr15 FPKM 0.901075 0.0 1.233447 2.809838 0.0 0.0 0.0 1.787438 1.097135 1.501899