Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cmo15g01272 ATGGGAACGAGGACGGGGATGAAGGCAATAATTATGACTATTTGTTTCCTTCTTTTTTCTCTTCTTTCTTTTTGTTCCCACACTCGTACAGTTACTTTTGAAGTCCACAACAATTGTCTCTTCACTATTTGGGCTGCCGCAGTACCAAGCGGTGGACGACAGCTTAATCAAACAGATGTTTGGACATTCAAAGTGAAACCTGCCCTCCAGGGTGTTCGAATTTGGGCTCGAACCAAATGCAACTTCGATGTGTTTGGTCGCGGTAGATGTGAGACTGGTGACTGTGGAGGCCTCCTCCAATGCCAAGCTTATGGTACTCCCCCGAACACCCTCGCCGAATATACATCGTACCTGTTCGATATCATGAACTTTGACATCGGTGATATTTCTCTCATCGATGGGTTTAATGTTCCGATGGAGTTCAGCCCCACTTCTCGCAAGTGTACTGGTGGCAGCATCAGCTGCACGGCGGACATCAACGGACAGTGCCCAAAGGAGTTGAGGGCTCCTGGAGGCTGCAACAATCCTTGCACCGTGTTCGGTGGCGATCGATACTGCTGCACTGCCCCAGACAGCAGTTGTGGGTCTACAAGTTACTCTAGATTCTTTAAAAATCTATGCCCAGATGCATATAGTTATCGTGACGACGTTGCCAAAAATGAACCAACTATAACTATAAAGTCGTCTTCTGCCCTTAGAACCCTACAATATAAAAACCAACGCTTTGCTCAGATCCGCAACAACTGTCCCTTCACTGTTTGGGCTGCCGCAGTGCCCGGCGGTGGACGACGGCTTAATCAAAATGATGTTTGGACATTCAACGTGAATCTTGGCACTGTTGCCGCTCGTATTTGGGCTCGAACCAACTGCAACTTCGATGCGTCGGGTTGCGGTCGATGTCAAACTGGCGACTGTGGTGGCCTCCTCCAGTGTCAAGCTTACGGTACTCCCCCGAACACCCTAACCGAGTACGCGTTGAACCAATTCAATAACTTGGACTTCTTTGATATTTCTCTCGTTGATGGATTTAACGTTTCGATGGAGTTCAGCCCGACCTCTGGCGGATGTACTCGTGGCATCAGGTGCTCAGCTGACATGAACAGAGAGTGCCCAAACGAGCTGAGGGCTCCCGGAGGCTGCAACAACCCTTGCACGACGTTTGGTGGCGATCGGTACTGCTGCACTGCCCCCAAACAGCAGCTGCGGGCCAACAGAATACTCCATATTCTTCAAGAATCGGTGCCCAGATGCGTACAGTTACCTAAAAGACGATGCCACCAGCACCTTTACTTGCCTGGGAGGAACCAACTATAG 1314 49.77 MGTRTGMKAIIMTICFLLFSLLSFCSHTRTVTFEVHNNCLFTIWAAAVPSGGRQLNQTDVWTFKVKPALQGVRIWARTKCNFDVFGRGRCETGDCGGLLQCQAYGTPPNTLAEYTSYLFDIMNFDIGDISLIDGFNVPMEFSPTSRKCTGGSISCTADINGQCPKELRAPGGCNNPCTVFGGDRYCCTAPDSSCGSTSYSRFFKNLCPDAYSYRDDVAKNEPTITIKSSSALRTLQYKNQRFAQIRNNCPFTVWAAAVPGGGRRLNQNDVWTFNVNLGTVAARIWARTNCNFDASGCGRCQTGDCGGLLQCQAYGTPPNTLTEYALNQFNNLDFFDISLVDGFNVSMEFSPTSGGCTRGIRCSADMNRECPNELRAPGGCNNPCTTFGGDRYCCTAPKQQLRANRILHILQESVPRCVQLPKRRCHQHLYLPGRNQL 437
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
15 8705503 8707463 + CmoCh15G012720.1 Cmo15g01272 398780

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cmo15g01272 437 PANTHER OS03G0233200 PROTEIN 244 398 IPR001938 -
Cmo15g01272 437 ProSitePatterns Thaumatin family signature. 296 311 IPR017949 -
Cmo15g01272 437 Gene3D Thaumatin 243 431 IPR037176 -
Cmo15g01272 437 SUPERFAMILY Osmotin, thaumatin-like protein 243 413 IPR037176 -
Cmo15g01272 437 PANTHER THAUMATIN-LIKE PROTEIN 8 218 - -
Cmo15g01272 437 ProSiteProfiles Thaumatin family profile. 245 426 IPR001938 -
Cmo15g01272 437 PANTHER THAUMATIN-LIKE PROTEIN 244 398 - -
Cmo15g01272 437 CDD TLP-P 244 392 - -
Cmo15g01272 437 PANTHER OS03G0233200 PROTEIN 8 218 IPR001938 -
Cmo15g01272 437 ProSitePatterns Thaumatin family signature. 86 101 IPR017949 -
Cmo15g01272 437 Gene3D Thaumatin 30 236 IPR037176 -
Cmo15g01272 437 ProSiteProfiles Thaumatin family profile. 30 216 IPR001938 -
Cmo15g01272 437 Pfam Thaumatin family 247 398 IPR001938 -
Cmo15g01272 437 Pfam Thaumatin family 37 227 IPR001938 -
Cmo15g01272 437 SMART tha2 243 426 IPR001938 -
Cmo15g01272 437 SMART tha2 33 230 IPR001938 -
Cmo15g01272 437 PRINTS Pathogenesis-related protein signature 296 325 IPR001938 -
Cmo15g01272 437 PRINTS Pathogenesis-related protein signature 242 254 IPR001938 -
Cmo15g01272 437 PRINTS Pathogenesis-related protein signature 333 349 IPR001938 -
Cmo15g01272 437 PRINTS Pathogenesis-related protein signature 261 270 IPR001938 -
Cmo15g01272 437 PRINTS Pathogenesis-related protein signature 283 294 IPR001938 -
Cmo15g01272 437 SUPERFAMILY Osmotin, thaumatin-like protein 31 223 IPR037176 -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cmo15g01272 - - - cmos:111430220 546.199
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cmo15g01270 Cmo-Chr15:8697903 Cmo15g01272 Cmo-Chr15:8705503 1.36E-75 dispersed
Cmo15g01272 Cmo-Chr15:8705503 Cmo15g01274 Cmo-Chr15:8711302 3.04E-85 dispersed
Cmo15g01271 Cmo-Chr15:8700802 Cmo15g01272 Cmo-Chr15:8705503 5.04E-72 tandem
Cmo15g01272 Cmo-Chr15:8705503 Cmo15g01273 Cmo-Chr15:8708248 4.84E-69 tandem
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi2g388 . . . . . . . . . . . Cma15g01207 . . . . . . . . . . . . . . . . . . . . . . . . Csa05g00314 . . . . . . . Bpe11g00682 . . . . Cmo15g01272 . . . . . Cpe13g00169 . . . . . . . Cla01g00291 Cam01g0302 Cec01g0294 Cco01g0309 Clacu01g0302 Cmu01g0287 Cre09g2220 Lsi09g00294 . . Cme09g01729
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0000769 1 3 0 2 2 1 3 4 2 3 2 2 6 4 3 7 2 3 2 3 3 4 5 2 6 4 5 3 2 3 92
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Cmo15g01272 Cmo_Chr15 FPKM 1.695652 1.462978 3.871782 2.999159 0.0 0.0 0.0 2.935187 3.213117 4.357904