Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cmo15g01274 ATGCGTTTACCAGGACCACATAATTTGAACATATTGTTTTTTTTATACTTATTCAAACATAATTGTCAAAGCCAGACGATAAGTCGTCCTCCTAATTCACTGTACCCAATCGGTTGTTTAAGCACAAAGCTTATGAAGATCACCATTTTCTTTCTCCTTTGCTCCACGCTTTTCTGCGTCAAATATGCGGATGCAGCCACTTTTAAAGTCCGCAACAATTGCCCTTTCACCGTTTGGGCGGCCGCTGTACCGGGCGGCGGACGAAGGCTCAACCGTAATGAGGTATGGACATTCTGGGTTAACCCCGGCACTGCTGCCGCTCGCATTTGGGCTCGAACCAACTGCAACTTTGACCAGTCTGGCAACGGACGATGTCAAACTGGGGACTGTGGTGGTCGCCTCCAATGCCAAGGCTACGGCGCTCCGCCCAACACCCTAGCTGAATACGCATTGAACCAATGGAACAACTTGGACTTCTTTGATATCTCGCTTGTCGATGGGTTTAACGTTCCAATGGAGTTCAGTCCCACTTCTGGTCGGTGCAGGGGCATCAGCTGTCGGTTTGACATCAACGCACAGTGCCCGAACGAGCTGAGGGCTCCGGGAGGCTGTAACAACCCGTGCACTGTCTTCAAGAGCGACCGGTATTGCTGCAACTCCGGCAACTGTGGAGCCACCTGGTACTCGAGATTTTTCAAGGACAGGTGCCCCAGCGCTTACAGTTACCCCAACGACAATCCAACCAGCACCTTCACTTGCCCCGGCGGAACCAATTATAGGGTTGTTTTCTGCCCTTAA 798 51.0 MRLPGPHNLNILFFLYLFKHNCQSQTISRPPNSLYPIGCLSTKLMKITIFFLLCSTLFCVKYADAATFKVRNNCPFTVWAAAVPGGGRRLNRNEVWTFWVNPGTAAARIWARTNCNFDQSGNGRCQTGDCGGRLQCQGYGAPPNTLAEYALNQWNNLDFFDISLVDGFNVPMEFSPTSGRCRGISCRFDINAQCPNELRAPGGCNNPCTVFKSDRYCCNSGNCGATWYSRFFKDRCPSAYSYPNDNPTSTFTCPGGTNYRVVFCP 265
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
15 8711302 8712935 + CmoCh15G012740.1 Cmo15g01274 398782

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cmo15g01274 265 CDD TLP-P 68 265 - -
Cmo15g01274 265 ProSitePatterns Thaumatin family signature. 121 136 IPR017949 -
Cmo15g01274 265 PIRSF PR5 20 265 IPR001938 -
Cmo15g01274 265 Pfam Thaumatin family 72 265 IPR001938 -
Cmo15g01274 265 Gene3D Thaumatin 65 265 IPR037176 -
Cmo15g01274 265 ProSiteProfiles Thaumatin family profile. 65 265 IPR001938 -
Cmo15g01274 265 SUPERFAMILY Osmotin, thaumatin-like protein 65 265 IPR037176 -
Cmo15g01274 265 PRINTS Pathogenesis-related protein signature 86 95 IPR001938 -
Cmo15g01274 265 PRINTS Pathogenesis-related protein signature 67 79 IPR001938 -
Cmo15g01274 265 PRINTS Pathogenesis-related protein signature 108 119 IPR001938 -
Cmo15g01274 265 PRINTS Pathogenesis-related protein signature 121 150 IPR001938 -
Cmo15g01274 265 PRINTS Pathogenesis-related protein signature 255 264 IPR001938 -
Cmo15g01274 265 PRINTS Pathogenesis-related protein signature 158 174 IPR001938 -
Cmo15g01274 265 PANTHER THAUMATIN-LIKE PROTEIN 45 265 - -
Cmo15g01274 265 SMART tha2 68 265 IPR001938 -
Cmo15g01274 265 PANTHER OS03G0233200 PROTEIN 45 265 IPR001938 -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cmo15g01274 - - - cmax:111468913 474.167
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cmo06g00751 Cmo-Chr6:3907656 Cmo15g01274 Cmo-Chr15:8711302 1.85E-91 dispersed
Cmo06g00752 Cmo-Chr6:3908968 Cmo15g01274 Cmo-Chr15:8711302 3.11E-94 dispersed
Cmo15g01271 Cmo-Chr15:8700802 Cmo15g01274 Cmo-Chr15:8711302 1.43E-88 dispersed
Cmo15g01272 Cmo-Chr15:8705503 Cmo15g01274 Cmo-Chr15:8711302 3.04E-85 dispersed
Cmo15g01274 Cmo-Chr15:8711302 Cmo04g02452 Cmo-Chr4:18152431 2.84E-53 dispersed
Cmo15g01273 Cmo-Chr15:8708248 Cmo15g01274 Cmo-Chr15:8711302 9.34E-111 tandem
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi2g385 . . . . . . . . . . . Cma15g01210 . . . . . . . . . . . . . . . . . . . . . . . . . Chy09g01195 . . . . . . . . . . . Cmo15g01274 . . . . . . . . . . . . . . . . . . . . . . . Cme09g01731
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0000769 1 3 0 2 2 1 3 4 2 3 2 2 6 4 3 7 2 3 2 3 3 4 5 2 6 4 5 3 2 3 92
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Cmo15g01274 Cmo_Chr15 FPKM 3.732222 3.649026 6.578881 6.263489 37.798634 30.950571 35.180454 3.082362 2.116513 2.69534