Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cmo15g01284 ATGAAACCCCCATCACTTGCCACAGGTTTTGAGTTTGTTCTTCCTCTTCTTCTTGCGACAATGGAGAGCCCTTCTCCGGCTTCATGCTGGAGCAATGTCGTGAAATCTCAGCCGGCTCCGAAGCCTCAGCATCAGACTCCGACCTCCTCCGTCCAAGTATTCGCCGATAGCTGCAAGTCCAGTCAAGGCGTTGCTGTTGCCGTTGTTGATGCCAACGCCATTATCCAAGGAGGAGAGAAGCTTTCCACCTGCGCGGATAAGTTTGTTTCCGTTCCTGAGGTTTTGGATGAGGTTCGCGATCCTGTGTCTCGCCATAGACTCGCCTTCGTCCCCTTCTCTCTCGAATCCATGGATCCCTCTCCTGAAGCTCTCAATAAAGTAATCAAGTTTGCAAGGGCAACTGGTGACTTACAGACGCTTTCAGATGTTGATATTAAACTTATTGCCCTCACTTACACGTTGGAGACTCAGATCCATGGAACCAAACATCTCCGTGAGTGTCCTCCCCCTGTCCACATGGTTAATACAAAGAGGTTACCTGAGAAAGACATGCCGGGGTGGGGCTCTAACGTTCCTAATCTGGAAGAATGGGAAGCATTAGAGCAAGATGCTGATGCTCCGTCCAATTCGACATCGAGGATTCTTCCTTTGCAGGATTTAAACTTGAACATCATCCCTTCAGATGGTCAATCTGAAGATCTTTCACTAGAGCCCAAGGATGGGAATTACTTGGAGCATCAAGATGAAACTGAGAGTGCATCAGGAAGATCAAGGAGGTATCCTCCAAAGAAGAAGGAAATTAATATTGAAGGGAAGAAGATGGTGGCTGATGGAATTGATGCATCTCAGGGACAATGTGATGATAATGAGGGTGAGTGGACACCTGCCGTCAGTCGAAGTACTCAGAGAAGATATATTAGGAGGAAAGCCAGACGTGAATATTACGAGTCCTTAGCTGAAAAGGATGGTCTGCAAGATGTTGAAACCACAGATGGTAACATCCAAGTGGAACCTAAGAGTTCAGGTCAATCACAGGATAAAATCTCTGAACTGCCAAATTCTGGAAATTTGAATGAGAGTCGGATAGAAGAAGGGACAAACAATAGTGAGAACCTCTCACAAATTTTGAAGCAGATGAGGCTGGAAGAAGATTCATTAAATACCCTTCATGTGGAAGGGCTTGGCGCTTCCACAAAAGAAGAATTTGATGAGAGTGAGTTGGAGGATGCTGTGGCTGTTGAAGGCTCGGATTATACAGTAAAGGATGAAATGGAACACATAGAAGACTTGAGTCAGACTAATGAAAGTGTAGACACGTCAAATGTAGATGATGTTAGCAGTGATCAGAGTTGGACGCTCAGATCCTTGTCTGAATCAAGTGTAGCATGTGTAACTGGTGACTTCGCGATGCAGAATGTTCTTCTGCAAATGGGTTTACGATTGTTGGCTCCAGGAGGAATGCAGATCCGGCAACTACACAGGTGGATTTTGAAATGTCACGCCTGCTACAATGTCACAGCTGAAATTGGAAGGATCTTTTGCCCAAAGTGTGGAAATGGTGGAACTTTACGCAAGGTAGCTGTTACAGTTGGCGAGAACGGAGTTGTGTTAGCAGCTCGTAAGCCGAGGATCACTCTGCGAGGCACAAAATTTTCACTTCCTCTACCGCAAGGTGGAAGAGACGCCATTACCAAAAATCTTGTCTTACGTGAAGATCAACTCCCGCAGAAATTTCTTCATCCCAAAACCAAGAAGAAAGCTAATAAGCAGGGAGATGACTTCTATCCCGTGGATAATTTCTTCAGCCACCACAATACTGATAAGAGGGCTCCTTTGCAGCCTCCTGTAAGGCAGGCTTTAGCAGTCTTTAGTGGGAAGAGAAATCCGAATGATAACCACTACTCCCGATCTAAGCATAAGTAG 1923 45.76 MKPPSLATGFEFVLPLLLATMESPSPASCWSNVVKSQPAPKPQHQTPTSSVQVFADSCKSSQGVAVAVVDANAIIQGGEKLSTCADKFVSVPEVLDEVRDPVSRHRLAFVPFSLESMDPSPEALNKVIKFARATGDLQTLSDVDIKLIALTYTLETQIHGTKHLRECPPPVHMVNTKRLPEKDMPGWGSNVPNLEEWEALEQDADAPSNSTSRILPLQDLNLNIIPSDGQSEDLSLEPKDGNYLEHQDETESASGRSRRYPPKKKEINIEGKKMVADGIDASQGQCDDNEGEWTPAVSRSTQRRYIRRKARREYYESLAEKDGLQDVETTDGNIQVEPKSSGQSQDKISELPNSGNLNESRIEEGTNNSENLSQILKQMRLEEDSLNTLHVEGLGASTKEEFDESELEDAVAVEGSDYTVKDEMEHIEDLSQTNESVDTSNVDDVSSDQSWTLRSLSESSVACVTGDFAMQNVLLQMGLRLLAPGGMQIRQLHRWILKCHACYNVTAEIGRIFCPKCGNGGTLRKVAVTVGENGVVLAARKPRITLRGTKFSLPLPQGGRDAITKNLVLREDQLPQKFLHPKTKKKANKQGDDFYPVDNFFSHHNTDKRAPLQPPVRQALAVFSGKRNPNDNHYSRSKHK 640
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
15 8792262 8795559 - CmoCh15G012840.1 Cmo15g01284 398792

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cmo15g01284 640 Pfam PIN domain of ribonuclease 68 154 IPR033411 -
Cmo15g01284 640 SUPERFAMILY NOB1 zinc finger-like 489 552 IPR036283 -
Cmo15g01284 640 Gene3D - 483 558 IPR036283 -
Cmo15g01284 640 MobiDBLite consensus disorder prediction 326 369 - -
Cmo15g01284 640 Coils Coil 362 382 - -
Cmo15g01284 640 MobiDBLite consensus disorder prediction 226 269 - -
Cmo15g01284 640 PANTHER - 22 639 - -
Cmo15g01284 640 PANTHER RNA-BINDING PROTEIN NOB1 22 639 IPR039907 -
Cmo15g01284 640 Pfam Nin one binding (NOB1) Zn-ribbon like 489 559 IPR014881 -
Cmo15g01284 640 MobiDBLite consensus disorder prediction 328 369 - -
Cmo15g01284 640 Gene3D - 58 173 - -
Cmo15g01284 640 MobiDBLite consensus disorder prediction 282 304 - -
Cmo15g01284 640 MobiDBLite consensus disorder prediction 233 269 - -
Cmo15g01284 640 CDD PIN_Nob1-like 78 165 IPR033411 -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cmo15g01284 K11883 NOB1; RNA-binding protein NOB1 - csv:101221544 1088.94
       

WGDs- Genes

Select Gene_1 Gene_2 Event_name
Cmo02g01502 Cmo15g01284 CST
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cmo15g01284 Cmo-Chr15:8792262 Cmo02g01502 Cmo-Chr2:8767695 0 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi2g340 . . . . . . . Bma14g00617 . . Cma02g01465 Cma15g01219 . Car15g01099 . . Cpe05g00323 . . . . . . . . . . . . . . Cone8ag0314 Cone12ag0314 . . . Csa05g00295 Chy09g01211 . Blo03g00335 . . . . Bpe11g00652 . . . Cmo02g01502 Cmo15g01284 . . . . . Cpe13g00161 Bhi12g00235 . . Lac11g2109 . . Lcy12g1665 Cla01g00276 Cam01g0286 Cec01g0279 Cco01g0292 Clacu01g0285 Cmu01g0272 Cre09g2235 . . . Cme09g01748
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0006981 1 1 2 1 1 1 1 1 1 1 1 1 2 1 1 2 1 2 2 1 1 1 1 1 1 1 1 3 1 1 37
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Cmo15g01284 Cmo_Chr15 FPKM 157.392838 169.653076 50.162464 51.472916 111.672783 129.144089 106.837166 71.44796 67.656204 65.276894