Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cmo15g01287 ATGGATGGGAGGGAAGGCATGGCATTGTCTGGTGGCTCTGCTTCTTATTACATACATAGAGGAGGAGGGCTTGGTGGGTCTGGATCAGGGGTGCCTACGGCTGGATCCCATGCCTCCCCTGTGTTCCGGCCGATGGCTAACCAGGGTGTTCTGTCTCACTCAAATCTCAGAGGCAATTCCGTTGGATCAACATATACTGTTGAGCCATCTCATTCAAATTATCTTCGTGGGATGAGTATCAATGCCTCAGCTGGAGTGAACTCTGGTGAACCTGTAAAGAGGAAGAGAGGGAGGCCACGGAAATATGCTCCAGATGGGCAGGTCTCATTGGGTCTGTCTCCCATGTCTGTTGGTTCTAAGCTCTCACCCGGCATGAGTTCGTCGACCCCCAGACGAAGACGAGGGCGGCCACCTGGTTCTGGAAGGAAACAACAATTAGCTCAACTTGGTAAATTTTTCTTTCTTGACATCGTAGCAAAAGTATTGTCGTTTGCACAGCAGAGGCCAAGGGCTGTTTGCATCTTGTCTGGAAATGGTACCGTTTCTTCCGTAACGCTACGTCAACCTGCATCTACTGGCGTGAGCGTCACATATGAGGGTCATTTCCAGATATTGTGCTTGTCTGGTTCTTACTTGGTGGCTGAAGATGGCGGTCCTCGAAGTAGGACGGGCGGTATTAGTGTTTCCCTTTCTAGTCCTGATGGTCATGTCGTCGGCGGTGGCGTTGCCGTTCTTATGGCAGCTGGCCCCGTTCAGGTAGTTGTATGTAGTTTTGTTTATGGTGCAAAGATAAAAAACAAGCAGGTCGCTGGTCCGAAAAGCAACGACGATTCCAGAAATGAGCACCGGGATAATATGGTTTCGCCTACGAGTGCCCCATCTGCCCACACCTACAACCCGTCTCCGATTGGTGGTTGGCCCGGTTCCCGTTCGATTGATGTGAGAAACTCCCATACTGGAATTGACTTGACGCGAGGATGA 981 50.87 MDGREGMALSGGSASYYIHRGGGLGGSGSGVPTAGSHASPVFRPMANQGVLSHSNLRGNSVGSTYTVEPSHSNYLRGMSINASAGVNSGEPVKRKRGRPRKYAPDGQVSLGLSPMSVGSKLSPGMSSSTPRRRRGRPPGSGRKQQLAQLGKFFFLDIVAKVLSFAQQRPRAVCILSGNGTVSSVTLRQPASTGVSVTYEGHFQILCLSGSYLVAEDGGPRSRTGGISVSLSSPDGHVVGGGVAVLMAAGPVQVVVCSFVYGAKIKNKQVAGPKSNDDSRNEHRDNMVSPTSAPSAHTYNPSPIGGWPGSRSIDVRNSHTGIDLTRG 326
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
15 8807628 8812441 - CmoCh15G012870.1 Cmo15g01287 398795
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cmo15g01287 326 MobiDBLite consensus disorder prediction 270 284 - -
Cmo15g01287 326 MobiDBLite consensus disorder prediction 83 143 - -
Cmo15g01287 326 PANTHER AT-HOOK MOTIF NUCLEAR-LOCALIZED PROTEIN 9 156 326 IPR039605 GO:0003680
Cmo15g01287 326 PANTHER AT-HOOK MOTIF NUCLEAR-LOCALIZED PROTEIN 9 1 152 IPR039605 GO:0003680
Cmo15g01287 326 MobiDBLite consensus disorder prediction 269 326 - -
Cmo15g01287 326 PRINTS AT-hook-like domain signature 129 140 IPR017956 GO:0003677
Cmo15g01287 326 PRINTS AT-hook-like domain signature 93 103 IPR017956 GO:0003677
Cmo15g01287 326 Gene3D - 155 271 - -
Cmo15g01287 326 PANTHER AT HOOK MOTIF DNA-BINDING FAMILY PROTEIN 156 326 - -
Cmo15g01287 326 PANTHER AT HOOK MOTIF DNA-BINDING FAMILY PROTEIN 1 152 - -
Cmo15g01287 326 MobiDBLite consensus disorder prediction 312 326 - -
Cmo15g01287 326 ProSiteProfiles PPC domain profile profile. 141 282 IPR005175 -
Cmo15g01287 326 MobiDBLite consensus disorder prediction 112 129 - -
Cmo15g01287 326 Pfam Plants and Prokaryotes Conserved (PCC) domain 156 259 IPR005175 -
Cmo15g01287 326 SUPERFAMILY AF0104/ALDC/Ptd012-like 156 259 - -
Cmo15g01287 326 CDD DUF296 156 258 IPR005175 -
       

Event-related genes

Select Gene_1 Gene_2 Event_name
Cmo02g01022 Cmo15g01287 CST
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cmo15g01287 Cmo-Chr15:8807628 Cmo01g02098 Cmo-Chr1:14534772 3.39E-58 dispersed
Cmo15g01287 Cmo-Chr15:8807628 Cmo17g00404 Cmo-Chr17:2679899 6.19E-76 wgd
Cmo15g01287 Cmo-Chr15:8807628 Cmo02g01494 Cmo-Chr2:8744133 0 wgd
Cmo15g01287 Cmo-Chr15:8807628 Cmo08g00884 Cmo-Chr8:5731032 9.11E-76 wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cmo15g01287 - - csv:101219973 543.502