Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cmo15g01289 ATGGGGAAAGGGAGACCAAGAGCTGTGGAAAAGGGGGTTTTAGGGCAAAATTTGAGTGTATGTTCATCTACTTCATTGAATATACCATCTGGACCTGCGTTTTATCCAACTGAAGATGAATTTAGAGACCCATTGGAGTATATATATAAGATCAGACCAGAGGCTGAGCCGTATGGGATTTGTAGGATAGTGCCTCCTAAGAACTGGAAACCTCCATTTGCATTGAGATTAGATTCTTTTACATTTCCCACAAAAACTCAGGCCATTCATCAATTGCAGGTTAGACCTGCTGCCTGTGATTCAGAGACGTTTGAGCTTGAATATAATAGGTTTTTGGATGGTCATTTTGGCAAAAAGATGAAGAAGAAGGTTGTTTTTGAGGGAGATGAGTTGGATTTGTGCAAGTTATTTAATGCAGTGAAGCGTTATGGTGGGTATGATAAAGTTGTTAAGGAGAAGAGGTGGGGGGAGGTTTTTAGGTTTGTTAGATCAACAAGGAAGATTTCAGAGTGTGCTAAGCATGTGCTTTGTCAATTGTATCGAGAACATTTATATGATTATGAGAACTATTATAATCAATTGAATAAGGATGTCACGAAGAGTTCAAAAAGGAAAATGCAAAACGAGAAGCTTACGGAGTGCTTGGCCGAGATTTCAACCTCTAAAAGGAGGCGGCAGAACACCGACGATTGTAGAGTCAAGGTCTCAAAGTTAAAAGACGAAGAAGATAACGATCAGATTTGTGAGCAATGTAAAAGTGGATTACATGGTGAAGTGATGCTTCTATGCGATAGGTGTGACAAGGGGTGGCACTTATATTGTCTCTCACCTCCTTTAAAGCAAGTTCCACCAGGGAACTGGTATTGTTTAGATTGCTTGAATTCAGAAAAGGATAGTTTTGGTTTTGTGCCTGGTAAAAGCTTCTCCCTGGAAGCATTTAAGCGTATGGATTGCAGGGCCAAGAAGAAATGGTTTGGCTCAGGGTCTGCTTCTAGGACGCAAATTGAGAAGAAGTTTTGGGAAATTGTGGAAGGTTCATTTGGTGAGGTTGAAGTTAAATATGGCAGTGACTTGGACACATCAGTTTATGGCAGTGGCTTTCCTCGTGAAAATGTCCAGAGACCAGAATCAATTGATGCTAAGCTGTGGGATGAATATTGCAATAGTCCTTGGAATCTCAATAACTTGCCCAAATTGGAAGGGTCCATGCTTAGAGCCATTCGTCACAATATTACTGGTGTTATGGTGCCCTGGTTGTATATTGGGATGCTATTTTCATCGTTCTGCTGGCATTTTGAAGATCATTGTTTCTATTCAATGAATTACCTGCACTGGGGTGACCCAAAATGCTGGTATAGTGTACCTGGTAGTGAAGCTACTGCTTTTGAGAAGGTTATGCGGAATAACCTTCCTGATCTTTTTGACGCACAACCTGATTTGCTTTTCCAACTTGTCACCATGTTGAATCCATCCGTCTTACAAGAAAATGGCGTACCTGTTTATACTGTACAGCAGGAGCCTGGAAATTTCGTTGTGACCTTCCCTAGATCTTACCATGGGGGTTTTAATCTTGGATTAAATTGTGCTGAGGCCGTAAATTTTGCTCCAGCTGATTGGATGCCTTATGGTGGGTTTGGAGAAGAACTGTATCAGCTTTATCACAAACCTGCTGTTTTTTCTCACGAGGAGCTTATCTGTGTGATAGCGAAGATGGACTGCAACGACCAAGTTTCTCCTTACCTGAAGAAAGAGTTACTTAGGATATATTCTAAGGAGAAAAGTTGGAGAGAACAACTTTGGAAAAATGGTGTAATCAGATCTTCTCCATTGCCTCCTCGGAAGTGTCCTGAATATATCAGTACTGAGGAGGATCCAACATGCGTAATTTGTAAGAAGTACCTTTATCTTTCAGCTATAGGTTGCCATTGTAGGAGATCTGCTTTTCACTGGCAACACCTTTGTGAATGCAAGTACAGCAGGCGGCGCCTTCGGTACCGTTATACACTTGCAGAACTATATGATTTGATTGCTATAGTTGATAAATCTATTTTTGGGGAGACAACTGAAAGTAAGTCCTTTAAGTTGCCATTTATTGAGGGGAGGGTTTTTCTTGGTAGAGTCAAGGAGCCATTGTTAATTCTAACTCAAAATACTTTGCAGGTGAAAGGTGGTCGTGTCACTCTGACTCAACTTGCAGAAAAATGGTTATTGCATTCGAGTAAGATTCTTCTAGATCCGTTCTCAAATGAGGCATGTGTTAAGGTTATGAGAGAAGCCGAGCAATTTCTTTGGGCTGGTCATGACATGGATCACGTTCGTGATGTGGTAAGAAACTTGGACGAAACTCAAAAGTGGGTTCAAGGCATCGGGGACTCCATTTGTAAAATTGAAGCGTGGTCATGTGATCATTCTGGAAGTTCAGAGAAAATTTGCATGGATCATGTAAATAATTTGTTGAGTCTACCCCCAATATCATGTAACCATCCTGGGTACCTCAAGTTGAAGGATTATGTTGAAGAAGCAAAGATGTTGATACAAGATATTGATAATACCTTATCAAGATGCCCTAATGTTTCTGAATGGGAAATTTTGTACTCGAGAGTGTGTGCCTTTCCAGTCCATATCAAAGAAAGTGAGAAGTTATCGGAAAAAATATCAATAGCGAAGTCTTGCATAGAAAGTGTCAGAGAAATTTTGGAGAAACAGCCGGCTGCTTTTGAGGTTGAGGTTCTTTACAAGTTGAAGTTTAAGATTTTGGAACTAGGAATCCAGCTTCCAGAGACAGAAATGGTACTGGATTTAATAAGGCAAGCTGAACTATGTCGTTCTAAATGTGAAGAAATTATGAAGGCTCCCATGAATTTGAAGATTGTCAAACAGTTCCTTCAAGAATCAAACGGTTTTGCTGTTAATATACCTGAACTGAAGCTTTTAAGACAGTATCATGATGATGCTGTTTCATGGAAGGGTCGTCTTAATGCTATTATGGTTAATGTTCATGAACGGGAGGATCAACATAATTTTATCTTTGATTTCATGGAATTCTGGGGGTGGGCTGAGACAGTTGATGATGTACCTTTAGTTGAGGTTGAGTTGCAGAAGGCTTCTGTCAGGGAAAAAGCTCAAAAGTTACGCGATACCAAGGTTACTATGGAATTCATGCAGAAACTGATGGAGGAGGCTGTTGAATTAGAACTTGATAAGGAAAAATTGTTTGCTGATATTCGTGGAGTTCTCGATTCAGCAATGAGTTTAGAGAAGAGAGCAATGGATTTTCTATCCCATGGGGCCCGGTTATCTGATTTTGAAGAGATTATAAGGACTTCTGAAGATTTATGTGTTATTCTACCTTCTCTTCATGATGTAAAGAATGAAGTATCCTTGGCCAAATCCTGGTTAAATTTTTCGAAGCCTTTCTTAGAATCTGTTCTCCCTATGTCTTCTGCACGAAGATCGCAGCTGAAAATTGAAACACTAAAGGAGTTGGTTTCTCAGTCAAAACTCCTTAAGGTTACTTTGGACGAAAGCAGAACGCTTGAAACCGTACTGAGAAACTGCGAGAATTGGAAAGAGGGAGCAAACTCTTTATTGCAAGATATTGATAATCTTTTGAATGCGAGTGATATAGGAGATGGCCTGAGCAATTGTCTTATTCCTAAGATTGAACAATTAATTGATAGAATCAATACTGCTATTACAGCCAGTTTATCTCTTGATTATGACTTCCGTGAGATTTCCAGACTTCAAAGTGCTTGTTCTACACTCATCTGGTGCAATAAAGTTCTTTCTCTTTGCCATGTTATTCCTTCTTATCAGGATGTTGAGAGCTTGTTGAGTGTTGAAGAGAACAGTTCATGTTTATATGCCTCCAGTGTTATGTCGAGCTTATTGGTGGACGGTGTCAAATGGCTGAAGCAAGCCTTAGAGGAAAAAGGAGATGCCGTTTCCTTCAATTGTTCTGAGCTACAATTAATTTTATCCGAAGCTGAAAAGATTGAAAAGTGGAAGAAACATATGCGGGAAATCATGAAAACATCTTTTGGGGATGAAAGTTCTTTGCTTGGTTGTCTACTAGAGATAAAGAAATCACTGGATAGATCCCTAAACATATATGAGAAGTCGTTGCTCAACACTGATCAAAACTTATGTGTGTGTTGCTCTAGCGATTCACAGGATCAGCATCTTTTTGCTTGCACAGTTTGTAAAGAAAGCTTAAGGGCTGTGTCCTTAGTTGATAAAAGTGGAGGTCCCTTGAGATTTTTAGCAAATCGTCCTGAACTAGGAATGCTCACTAAGCTCAAATCTGATGCCTTGAACTTTTATGTCTGGATGGAAGAGGAGGATGTATTACAGCAACTGGTAGAGCAGGCTTTAGTCTGCAAATCTCACTTGACAGAAGTCTTGGACTTTGCCTCACGTTGTCTCGATAAAGATTTTAGTACCACCTGCAAGAGGTTAACAGTAGCTTTAAAGGCTATGGACGTTGCAGGCATTAATGATCAGGAAGGTAAGTGTGGCCTTGAGATGGAACTAGTGAGGAACTCGTGGAGATTCAGAGTCAAGGAAGCTCTTGAAGGTTCTGAAAAACCAACAATGCAACAGGTCCTGGAGCTTCTCGAAGAGGGATCGGCCATAAGCATTCCGCTTGAAGATTTCTACAGAAAGAAACTTTTAGAAGTGAAGATTGTTTGCTCGAAGTGGAGAAGTCTTGCAAGGAAGATTTCAGCTGACTGTGGGGCTCTTGAATTGGAGAAAGTTTTCGAACTGATTGTGGAGGGTGAAAATTTACCTGCATACCTCGAGAGGGAGCTCAAGTTATTGAGAAATCGAAGTATGCTTTATTGCATTTGCCGAAAGCCAAATGATCGCAGACCAATGCTTGCTTGTGATATTTGTGAAGAGTGGTATCACTTTGATTGTGTCAAGATTGAATCTACTCCGAAGATATACATCTGCCCAGCCTGCAAACCGCAAGTAGACAATAAAATGTTGATTCAGCTATCAACAGAATATGAAAGACTGTCAAGTCACCGACCAGTTCATGCCAATCTAAGCAGTCTGATCTCTCTCAATCAAACCATTTCCATTTCTGAATTCATAGTTGGTTCTCTTTTGGATGAATGGGGTGCTTTTCCAGGCGCTTTCCGATCTACCGCCCCTAGGAGCGACGGGTTAGGCTTCGGATTCGGGCATCATTCGTCGTGCTTTGAATTTTCATATTTGCAGCACAGATTCTTTAGCTTAGGCATCAATGGTGGGGAGTTCAAAATGAGAAATGTCCTTGAACGTGGCCGTTTTCTCGGTTTAGATGTTGGTGATAAGTACGTTGGCTTGGCCGTCTCGGACTCGGATAATTAA 5358 40.57 MGKGRPRAVEKGVLGQNLSVCSSTSLNIPSGPAFYPTEDEFRDPLEYIYKIRPEAEPYGICRIVPPKNWKPPFALRLDSFTFPTKTQAIHQLQVRPAACDSETFELEYNRFLDGHFGKKMKKKVVFEGDELDLCKLFNAVKRYGGYDKVVKEKRWGEVFRFVRSTRKISECAKHVLCQLYREHLYDYENYYNQLNKDVTKSSKRKMQNEKLTECLAEISTSKRRRQNTDDCRVKVSKLKDEEDNDQICEQCKSGLHGEVMLLCDRCDKGWHLYCLSPPLKQVPPGNWYCLDCLNSEKDSFGFVPGKSFSLEAFKRMDCRAKKKWFGSGSASRTQIEKKFWEIVEGSFGEVEVKYGSDLDTSVYGSGFPRENVQRPESIDAKLWDEYCNSPWNLNNLPKLEGSMLRAIRHNITGVMVPWLYIGMLFSSFCWHFEDHCFYSMNYLHWGDPKCWYSVPGSEATAFEKVMRNNLPDLFDAQPDLLFQLVTMLNPSVLQENGVPVYTVQQEPGNFVVTFPRSYHGGFNLGLNCAEAVNFAPADWMPYGGFGEELYQLYHKPAVFSHEELICVIAKMDCNDQVSPYLKKELLRIYSKEKSWREQLWKNGVIRSSPLPPRKCPEYISTEEDPTCVICKKYLYLSAIGCHCRRSAFHWQHLCECKYSRRRLRYRYTLAELYDLIAIVDKSIFGETTESKSFKLPFIEGRVFLGRVKEPLLILTQNTLQVKGGRVTLTQLAEKWLLHSSKILLDPFSNEACVKVMREAEQFLWAGHDMDHVRDVVRNLDETQKWVQGIGDSICKIEAWSCDHSGSSEKICMDHVNNLLSLPPISCNHPGYLKLKDYVEEAKMLIQDIDNTLSRCPNVSEWEILYSRVCAFPVHIKESEKLSEKISIAKSCIESVREILEKQPAAFEVEVLYKLKFKILELGIQLPETEMVLDLIRQAELCRSKCEEIMKAPMNLKIVKQFLQESNGFAVNIPELKLLRQYHDDAVSWKGRLNAIMVNVHEREDQHNFIFDFMEFWGWAETVDDVPLVEVELQKASVREKAQKLRDTKVTMEFMQKLMEEAVELELDKEKLFADIRGVLDSAMSLEKRAMDFLSHGARLSDFEEIIRTSEDLCVILPSLHDVKNEVSLAKSWLNFSKPFLESVLPMSSARRSQLKIETLKELVSQSKLLKVTLDESRTLETVLRNCENWKEGANSLLQDIDNLLNASDIGDGLSNCLIPKIEQLIDRINTAITASLSLDYDFREISRLQSACSTLIWCNKVLSLCHVIPSYQDVESLLSVEENSSCLYASSVMSSLLVDGVKWLKQALEEKGDAVSFNCSELQLILSEAEKIEKWKKHMREIMKTSFGDESSLLGCLLEIKKSLDRSLNIYEKSLLNTDQNLCVCCSSDSQDQHLFACTVCKESLRAVSLVDKSGGPLRFLANRPELGMLTKLKSDALNFYVWMEEEDVLQQLVEQALVCKSHLTEVLDFASRCLDKDFSTTCKRLTVALKAMDVAGINDQEGKCGLEMELVRNSWRFRVKEALEGSEKPTMQQVLELLEEGSAISIPLEDFYRKKLLEVKIVCSKWRSLARKISADCGALELEKVFELIVEGENLPAYLERELKLLRNRSMLYCICRKPNDRRPMLACDICEEWYHFDCVKIESTPKIYICPACKPQVDNKMLIQLSTEYERLSSHRPVHANLSSLISLNQTISISEFIVGSLLDEWGAFPGAFRSTAPRSDGLGFGFGHHSSCFEFSYLQHRFFSLGINGGEFKMRNVLERGRFLGLDVGDKYVGLAVSDSDN 1785
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
15 8818298 8843309 - CmoCh15G012890.1 Cmo15g01289 398797

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cmo15g01289 1785 Pfam PLU-1-like protein 888 1197 IPR013637 -
Cmo15g01289 1785 Pfam PLU-1-like protein 800 1000 IPR013637 -
Cmo15g01289 1785 SMART ARID_2 95 188 - -
Cmo15g01289 1785 Pfam ARID/BRIGHT DNA binding domain 120 188 IPR001606 GO:0003677
Cmo15g01289 1785 Gene3D Cupin 13 535 - -
Cmo15g01289 1785 Coils Coil 1027 1047 - -
Cmo15g01289 1785 SMART cupin_9 385 551 IPR003347 -
Cmo15g01289 1785 SUPERFAMILY FYVE/PHD zinc finger 235 296 IPR011011 -
Cmo15g01289 1785 SUPERFAMILY Clavaminate synthase-like 339 568 - -
Cmo15g01289 1785 Coils Coil 1054 1074 - -
Cmo15g01289 1785 SMART PHD_3 247 293 IPR001965 -
Cmo15g01289 1785 SMART PHD_3 1614 1656 IPR001965 -
Cmo15g01289 1785 ProSiteProfiles Zinc finger PHD-type profile. 245 295 IPR019787 -
Cmo15g01289 1785 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 1607 1670 IPR013083 -
Cmo15g01289 1785 ProSiteProfiles JmjC domain profile. 385 551 IPR003347 -
Cmo15g01289 1785 Gene3D - 98 210 IPR036431 GO:0003677
Cmo15g01289 1785 PANTHER LYSINE-SPECIFIC DEMETHYLASE 23 1059 - -
Cmo15g01289 1785 Pfam PHD-finger 1614 1657 IPR019787 -
Cmo15g01289 1785 Pfam PHD-finger 247 294 IPR019787 -
Cmo15g01289 1785 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 232 302 IPR013083 -
Cmo15g01289 1785 SMART bright_3 99 193 IPR001606 GO:0003677
Cmo15g01289 1785 SMART JmjN_1 30 71 IPR003349 -
Cmo15g01289 1785 ProSitePatterns Zinc finger PHD-type signature. 1615 1655 IPR019786 -
Cmo15g01289 1785 Pfam C5HC2 zinc finger 627 674 IPR004198 -
Cmo15g01289 1785 CDD PHD_RSF1 248 292 - -
Cmo15g01289 1785 ProSitePatterns Zinc finger PHD-type signature. 248 292 IPR019786 -
Cmo15g01289 1785 Pfam JmjC domain, hydroxylase 418 534 IPR003347 -
Cmo15g01289 1785 Pfam jmjN domain 32 65 IPR003349 -
Cmo15g01289 1785 SUPERFAMILY ARID-like 81 199 IPR036431 GO:0003677
Cmo15g01289 1785 PANTHER LYSINE-SPECIFIC DEMETHYLASE LID 23 1059 - -
Cmo15g01289 1785 CDD ARID 100 188 - -
Cmo15g01289 1785 ProSiteProfiles JmjN domain profile. 31 72 IPR003349 -
Cmo15g01289 1785 ProSiteProfiles ARID domain profile. 98 192 IPR001606 GO:0003677
Cmo15g01289 1785 SUPERFAMILY FYVE/PHD zinc finger 1609 1661 IPR011011 -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cmo15g01289 K11446 KDM5, JARID1; [histone H3]-trimethyl-L-lysine4 demethylase [EC:1.14.11.67] - csv:101216734 2281.91
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cmo02g01493 Cmo-Chr2:8740724 Cmo15g01289 Cmo-Chr15:8818298 7.82E-09 dispersed
Cmo13g00490 Cmo-Chr13:5874937 Cmo15g01289 Cmo-Chr15:8818298 8.34E-11 dispersed
Cmo15g01289 Cmo-Chr15:8818298 Cmo19g00232 Cmo-Chr19:1610482 1.98E-07 dispersed
Cmo17g01015 Cmo-Chr17:8706396 Cmo15g01289 Cmo-Chr15:8818298 2.11E-09 dispersed
Cmo20g01075 Cmo-Chr20:9949118 Cmo15g01289 Cmo-Chr15:8818298 4.11E-10 dispersed
Cmo15g01289 Cmo-Chr15:8818298 Cmo18g00512 Cmo-Chr18:3677053 4.44E-12 transposed
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi2g327 . . . . . . . Bma14g00076 . . . Cma15g01224 . Car15g01104 . . . . . . . . . . . . . . . . . Cone8ag0485 Cone12ag0310 . . . Csa05g00286 Chy09g01220 . . . . . . . . . . . Cmo15g01289 Cma06g00632 . Car06g00566 . . Cpe13g00159 Bhi12g00252 . . . . . . . . . . . . . . . . Cme09g01757
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0010126 0 2 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 2 1 1 1 1 1 1 1 1 1 2 1 1 32
       

Regulatory proteins

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
11216 PF08429 PLU-1 6.20E-22 No_clan Cmo TR
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Cmo15g01289 Cmo_Chr15 FPKM 2.912169 2.070914 20.164568 19.510027 3.241249 2.809904 2.797604 0.709035 0.893891 1.071568