Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cmo15g01291 ATGTTCGGTTTTAAAATATTGAAAATGACTTTTAGTTCCAAATTTATCAACATGGGCTCGAATGTTTCCACTAGCGATGAGGAAGACGAAGTACCAGTTACGAAGCAGCAACCTTCCAATTCAGACGACAACTTGTCAATTCGTAGGAAGAGGAAGAAGATGAAGCTTCTAGAGGAGGAGGAGGAGGAGGAGGTGGTGGAAGGGGACGAGAGGCATCGCAGGAGTAGAAGAAGTAGTAACAAGGGAGAGAAGGAGGTGGAAGCGTCGAAACGACAGCAGGCGGAAGATGAAGATGAGGATGATCAGTCGCAAGAGGATGCGAAGCCGATTGGGGATGCTGTTAGGGTTTCTGGGAAAGGGAGGGGACGGAAGAGCCACTACAACGCGTTTGAATATGATGGGAACAAATATGATCTTGTGAGTTACTTTGTGTTATTGGTTGATATTGTGCTAAAGTGTAACGAGAAGCTTCTCGAGGATCCGGTACTTCTAGTTCCTGAGGACAAGGATCAAAAACCTTATGTGGCAATTATTAAGGTAACTGGCTTAGTCTTTTGCCATCCTCTCTTTGTAGGAAACATTTATGATATTACTCGGAACAAAGATGGCATGATGGTCACTGGGCAGTGGTTTTACCGTCCTGAAGAAGCTGAAAAAAAGGGGGGTGGAAGTTGGCAATCACATGATACTCGAGAGCTGTTTTATAGTTTCCACCGAGATCAGGTTCCTGCAGAATCTGTAATGCACAAATGTGTTGTGCATTTTGTTCCATTGCATAAGCAACTTCCAATTCGTAAGCAACATCCTGGATTTATTGTGCGAAAAGTGTACGACACAGTTGAAAAAAAACTTTGGAAACTAACTGATAAGGATTACGAAGACTCTAAGCAGCAGGAAATTGATGAACTTGTCAAGAAGACTATGTCACGGTTAGGAGATCTCCCTGATATTGAGCCTGAAGATGCCACACCTGATCTGGAAGATCAGTTGAAAACTAAAAGAAGTCTCAAAAGAAAAAACATTTCTCCTCTTGATGTTACAAGAGATGAATCAGAGGCAACCAGATCTGATCACAGCTTAAAAGCTGAAACTCCAGGAAGCTGTCCAACTAATCGATCAGAGTACTACTCCATATTGGAAATACACGATGTTCTAACAGGTGAAACACATCGAGATAGATGGTTGGAAAAACTTTTGGAGGGGGTTCAGTACATATGTCACTCTCCTGAGAACACACGTGAGGATGATACAGGAAAAACTGCTGCTAATGGTGTCAACCATGAAAATAAGAATCCAGAATCGTCGAGGACAGCAGAGAACAATGATAAAAGCTGCAAGTCTTTTCTCTGGCCAGATGCAGCCGTTCCGGCAATAACTGGTCTTGAGAAGGTGTCGAATGATGCTCTGTCTGCCGATTTTCAGAAGTATAACCAAAAAATGCGGCAATTGGTGTTCAATCTCAAGAATAATCGTTTACTAGCTCAACGGCTGTTAAATGGAGAGTTGGAACCGTTAAAAATCCTTAATATGTCACCCAATGAGCTTAAGGAAGGACTGACTGCTGAGGAGACAGCTGCAAATAAAGAGCCTGATGAATCTGAGCGTATGCAGTTGGAGTGCATTGCCTGTGGTCATTCTTGGTATGCCTCTAGGGATGAACTATCCATGCTAACAATAGACGCAGCGACAAATTCTACAAAGGGCGTTGGAACTGCACCATGGGCAACTGCCAAATTCGAAGATGTGGAGAAGAGTCTACTCAGTCCTCACGAACCCGAAAAAGCTGCTGAGGACCTCTTCAAAAAGACGACTGAAGCGTACATGCCAGTGTTGGATAGCCAGAAATCTAGCAAGTCTAAAAAGGAAGACAACGTTTTTGCCGACAACTATTTAATTTTTAGTTTTTGTAAAATGTCTGGCTGTCTTTCTTCTGCCACTACATTTGCACATTTGGATGCTAGCATTGTACTATCAAGAGCATCAGTTGCCAAAAGTATCTATTCAGCAATAGATCTTTTAGATTCAACATCAACTATGCTACAACCTCGAATTTATCGTAATATCCTTATGCATAGATTGGGGTGCCCCAAATGTATAATTTATTTGTTTAGGGCACCCAAAGACCCTTCACTCGTAGCTGTGGATCATACAATGGGGCAAGATACAGAATTGGACTTTGACAGTATTTGCTCTGTGGATCTGAGTCCTAACACAGTTCTACCATCGATCCCACGACATTCCAGCATTAAGACTAGAAGCTCAAGAAAAAAACACAAGCATAAAGATTTCGTAATGAGTGTGAAGGATGATTTTACTGAGATTAGATTTGGTGGCAGCCGTAGGTCTCGAAAAAGCAATTCATCTAGCCTACTTGAACTAGAAGATAATGAGCATATAGGTTTTGAATTGAATGTAAAGGATGATTTCACAGAGATTAGATTTGGCGGCGACCGAAGTTCCCGTAAAGGCGATTCACCTTGCCTAGATGAATTGGAAGATGATAAAGCGCTCAAACGGGGTTCGAAGTACCAAAGCTATGAAGATGTAGGTAGTATAGAAAGGATGAGCATTCAAGGAGAAAGGAGAAAGATAGAAATTTCTCATGACAATAAGATCTCTTTGTCTTCTGGTATTGTTGATTCTTTGTGTAGTTCAGATGAGGAAAAACTAGAGAGGAGAGATAATGTATTATCTTTGAACACAAAACTGAATCAATCATCAGTTAGTAAGGCTTGCATACGCCCACGTTCATCGGATAGCTTCCTTGAGATCTACTTAGGTTCCGAGAACAGTGAAGCTCTATCGAAAGATTCAAGCAATCAGCTCGGAAATGTTACAGGCATTAGACCTCTTCACAATGGCAAGAAACTTTTCAAGAGAGACAAGGTTTACGCATTGCAGAAGTCGCTCTCTGCTAAGGTAGAAATGCCTAAAAACCAGCTTCCGTTGGAGAGTGATCTACGGTTTAGACACGGCCAAAAGGTTCGTACAAGCCCTTTCAGGAAAATGTTGGATCCATTTATGAAGTCTAAATCTGTTAGAAGTCGTTTCAGTCATGCAATAGAAGCTGATGGAGATAAAGCTGTCAAGACAATTGACTTGCAGAGAAACGAGACACACAGAAAGGCGAAGAGTTCAGATTGTGAATCCGATTTTTCGAATAATGATAATCGCCATAATGTTGTTGCATCTTCGCCCGTACATTTACATGGCTCTCTCAAGTTGGAAAGAAAACATGGGATGCCATTTTTTGAGTTCTCTCAGAGCTCTCCCGAAGATGTCTACGTAGCCAAGACGTGGAAGACAGACGATGCTTTTAAATGGGTATACACATTTCATACCCAAGATCATCAAAAGAAGAGCAATGCAAGTAATTTTGGATTGAATCATAGCTGCAAAAACTCCTTAATGGTGGGTCAGATGCAAGTTTCCTGTTATTTATCCTCCGAACTTCGAGATGGTGGTTTTGACAACTCGATGGTCACAGAATTCGTTCTGTACGAAACGGGGCGTGCTAGAAAAAGTACAGCATCACAGGGAAGTTGCGACTTTATCCACGACGCTGTCAAACCTCCTAAAAGTTCTAATTCAGCCTTGGTTGAGGAAGCTTTTAGTATGAACGATGGGACCTTAGAAAAACCAAAATTTCAGCAAAAACAAGCTTCTGAAAACTGTGATTATGGTTCTATTGATTCTTGCCCTTGGGATTCAGCAGATTTACATCCAGACCTGGAAGCTGCAGCTATTGTTATGCAAATCCCATTTAGAAAAAGAGGTGATAAGCCAAGCAGCAAATTGATCTCAGCCGTCCAAAACCTCTCTAAGATTGAACAAAGGAAAGACGAACCTCCCCATCACACAACTCGAGAAACTCTGAAGGTGGTCATTCCCATTGGAAACCATGGTTTGCCTACTGTCGAAAGCCATGGCCCTTCTCCGTTACTTGATCGATGGAGATTGGGAGGCGGGTGTGACTGTGGTGGTTGGGACATGGGCTGTCCTCTATTAGTTTTGGGCACCCACAGTGTTGAAAATCAAGCACACAAGGGGAAACAAACCTTTGAGCTTTTTCATCAGGGAGTAAAGGATACGACTCCGGCATTGACTATGAATGTTGTTAAAGATGGACACTACGCTGTCGATTTTCACGCGCGATTATCGACGTTGCAAGCGTTCTCCATTTGTGTTGCTATTTTACATGCGACTGAAGCTTGCAATGCTGTCCAGGTGGAGGAAACAAAAGAGTTGCAGCCTTGCAATTCTTTAAAGGTGCTTCTTGAGGAGGAAGTAAAGTTCTTGATCGACGCAGTCACGATGGAGGAGAAGAAAAAAGAAACGAGAACATTGAAAGAAACACCGTCGTCGTATTTGTTCAATCCTCCGTTTTCTCCGATTGCTAGAGTGTAG 4407 42.25 MFGFKILKMTFSSKFINMGSNVSTSDEEDEVPVTKQQPSNSDDNLSIRRKRKKMKLLEEEEEEEVVEGDERHRRSRRSSNKGEKEVEASKRQQAEDEDEDDQSQEDAKPIGDAVRVSGKGRGRKSHYNAFEYDGNKYDLVSYFVLLVDIVLKCNEKLLEDPVLLVPEDKDQKPYVAIIKVTGLVFCHPLFVGNIYDITRNKDGMMVTGQWFYRPEEAEKKGGGSWQSHDTRELFYSFHRDQVPAESVMHKCVVHFVPLHKQLPIRKQHPGFIVRKVYDTVEKKLWKLTDKDYEDSKQQEIDELVKKTMSRLGDLPDIEPEDATPDLEDQLKTKRSLKRKNISPLDVTRDESEATRSDHSLKAETPGSCPTNRSEYYSILEIHDVLTGETHRDRWLEKLLEGVQYICHSPENTREDDTGKTAANGVNHENKNPESSRTAENNDKSCKSFLWPDAAVPAITGLEKVSNDALSADFQKYNQKMRQLVFNLKNNRLLAQRLLNGELEPLKILNMSPNELKEGLTAEETAANKEPDESERMQLECIACGHSWYASRDELSMLTIDAATNSTKGVGTAPWATAKFEDVEKSLLSPHEPEKAAEDLFKKTTEAYMPVLDSQKSSKSKKEDNVFADNYLIFSFCKMSGCLSSATTFAHLDASIVLSRASVAKSIYSAIDLLDSTSTMLQPRIYRNILMHRLGCPKCIIYLFRAPKDPSLVAVDHTMGQDTELDFDSICSVDLSPNTVLPSIPRHSSIKTRSSRKKHKHKDFVMSVKDDFTEIRFGGSRRSRKSNSSSLLELEDNEHIGFELNVKDDFTEIRFGGDRSSRKGDSPCLDELEDDKALKRGSKYQSYEDVGSIERMSIQGERRKIEISHDNKISLSSGIVDSLCSSDEEKLERRDNVLSLNTKLNQSSVSKACIRPRSSDSFLEIYLGSENSEALSKDSSNQLGNVTGIRPLHNGKKLFKRDKVYALQKSLSAKVEMPKNQLPLESDLRFRHGQKVRTSPFRKMLDPFMKSKSVRSRFSHAIEADGDKAVKTIDLQRNETHRKAKSSDCESDFSNNDNRHNVVASSPVHLHGSLKLERKHGMPFFEFSQSSPEDVYVAKTWKTDDAFKWVYTFHTQDHQKKSNASNFGLNHSCKNSLMVGQMQVSCYLSSELRDGGFDNSMVTEFVLYETGRARKSTASQGSCDFIHDAVKPPKSSNSALVEEAFSMNDGTLEKPKFQQKQASENCDYGSIDSCPWDSADLHPDLEAAAIVMQIPFRKRGDKPSSKLISAVQNLSKIEQRKDEPPHHTTRETLKVVIPIGNHGLPTVESHGPSPLLDRWRLGGGCDCGGWDMGCPLLVLGTHSVENQAHKGKQTFELFHQGVKDTTPALTMNVVKDGHYAVDFHARLSTLQAFSICVAILHATEACNAVQVEETKELQPCNSLKVLLEEEVKFLIDAVTMEEKKKETRTLKETPSSYLFNPPFSPIARV 1468
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
15 8854091 8872947 + CmoCh15G012910.1 Cmo15g01291 398799

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cmo15g01291 1468 MobiDBLite consensus disorder prediction 324 359 - -
Cmo15g01291 1468 MobiDBLite consensus disorder prediction 312 369 - -
Cmo15g01291 1468 PANTHER DOMAIN PROTEIN, PUTATIVE (DUF3527)-RELATED 723 1468 - -
Cmo15g01291 1468 Gene3D - 383 517 IPR036575 GO:0006351
Cmo15g01291 1468 MobiDBLite consensus disorder prediction 67 97 - -
Cmo15g01291 1468 Gene3D - 642 693 - -
Cmo15g01291 1468 SUPERFAMILY Elongation factor TFIIS domain 2 453 516 IPR036575 GO:0006351
Cmo15g01291 1468 ProSiteProfiles BAH domain profile. 170 288 IPR001025 GO:0003682
Cmo15g01291 1468 Pfam Domain of unknown function (DUF3527) 1066 1401 IPR021916 -
Cmo15g01291 1468 MobiDBLite consensus disorder prediction 19 121 - -
Cmo15g01291 1468 Pfam BAH domain 160 286 IPR001025 GO:0003682
Cmo15g01291 1468 Pfam Transcription factor S-II (TFIIS), central domain 386 529 IPR003618 GO:0006351
Cmo15g01291 1468 MobiDBLite consensus disorder prediction 409 442 - -
Cmo15g01291 1468 ProSiteProfiles TFIIS central domain profile. 390 543 IPR003618 GO:0006351
Cmo15g01291 1468 MobiDBLite consensus disorder prediction 44 59 - -
Cmo15g01291 1468 SMART mid_6 388 525 IPR003618 GO:0006351
Cmo15g01291 1468 Coils Coil 47 67 - -
Cmo15g01291 1468 SMART BAH_4 176 288 IPR001025 GO:0003682
Cmo15g01291 1468 Gene3D - 100 305 IPR043151 -
Cmo15g01291 1468 PANTHER EXPRESSED PROTEIN 723 1468 - -
Cmo15g01291 1468 CDD BAH_plant_3 117 297 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cmo15g01291 - - - bhj:120068157 1211.44
       

WGDs- Genes

Select Gene_1 Gene_2 Event_name
Cmo02g01488 Cmo15g01291 CST
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cmo06g01307 Cmo-Chr6:9799721 Cmo15g01291 Cmo-Chr15:8854091 8.87E-23 dispersed
Cmo10g00147 Cmo-Chr10:673801 Cmo15g01291 Cmo-Chr15:8854091 4.83E-19 dispersed
Cmo11g00110 Cmo-Chr11:574781 Cmo15g01291 Cmo-Chr15:8854091 3.68E-19 dispersed
Cmo11g01707 Cmo-Chr11:12114958 Cmo15g01291 Cmo-Chr15:8854091 1.29E-19 dispersed
Cmo14g00643 Cmo-Chr14:3235332 Cmo15g01291 Cmo-Chr15:8854091 1.10E-18 dispersed
Cmo14g01881 Cmo-Chr14:14097025 Cmo15g01291 Cmo-Chr15:8854091 4.06E-26 dispersed
Cmo15g01291 Cmo-Chr15:8854091 Cmo20g00408 Cmo-Chr20:1944889 2.94E-27 dispersed
Cmo02g01488 Cmo-Chr2:8715226 Cmo15g01291 Cmo-Chr15:8854091 0 transposed
Cmo15g01291 Cmo-Chr15:8854091 Cmo02g01487 Cmo-Chr2:8709250 0 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi2g322 . . . . . . . . . . Cma02g01453 Cma15g01226 Car02g01219 Car15g01106 . . Cpe05g00334 . . . . . . . . . . . . . . Cone8ag0305 . Cone6ag0779 Cone9ag0784 . Csa05g00281 Chy09g01228 . . . . . . . . . . Cmo02g01488 Cmo15g01291 . . . . . Cpe13g00157 Bhi12g00260 . . . . . . Cla01g00265 Cam01g0272 Cec01g0265 Cco01g0280 Clacu01g0272 Cmu01g0260 Cre09g2248 Lsi09g00260 . . Cme09g01763
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0007949 0 2 1 1 1 1 2 1 1 1 1 1 2 1 1 2 1 2 2 1 1 1 1 1 1 1 1 2 2 0 36
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Cmo15g01291 Cmo_Chr15 FPKM 46.466194 51.915634 12.97156 14.380756 17.63983 18.418907 18.779989 10.923786 10.260884 9.793924