Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cmo15g01297 ATGGATTTGCAGAGGCGTTTTCTTGGTGGGTTCGTCATATCCGCTCTGGTTTTGCTGCTGATTTTTCCTTGTCATGTGACGGCTGGGGATATTGTTCATCATGACGATTTGACTCCCAAAAAGCCTGGCTGCGAGAACGATTTCATTCTGGTCTGCCTTGATGCATATGCAGAATACTTCAGTTCCCACCTCCGTGTGTATTGTGTCTTTGTTTCAATTCGGGTGAAAGTTCAAACTTGGATTGATGGCAAAGAAGCTAGTGAATTTGTCGGCGTTGGTGCTAGATTTGGCGCTACCATCGTGTCAAAGGAGAAAAATGCAAACCAAACACGCCTGGTTCTTGCACATCCCCGTGATTGTTGCGGTGTGCCAAAGAACAAGCTTTCTGGAGATATAATCATGGTGGATCGAGGTCACTGCAAGTTTACTACTAAAGCAAATATTGCAGAAGCTGCAGGTGCTTCAGCTATACTCATACTTTCATATCCTCTAAACATGCTTGTGGGCTTTTCAGAGCTTTACAAGATGGTTTGTGATCCTGATGAGACTGATCTTGATATACATATACCTGCTGTCATGCTCCCACAAGATGCTGGTACAAGCTTGGAGAAGATGCTGATCAGCAATTCATCAGTGTCTGTTCAGCTCTACTCTCCACTACGACCACCTGTCGACATAGCTGAAGTATTCTTATGGTTGATGGCTGTCGGTACGATCTTATGCTCATCCTTTTGGTCTGCCTGGAGTGCTAGGGAAGCTGCGATTGAGCAGGACAAGCTACTAAAGGTAACCTTTCTCATATTGTTCGCTAAGGATGGTGCAGATGATATTCAAAATGCTGAAGATGTGGGCAGCCCTGGTGTTGTATATATCAACATGGCATCAGCCGTCCTGTTTGTTGTCGTTGCTTCGTGCTTTTTGATTTTGCTTTACAAACTCATGTCGTATTGGTTCATCGAGCTTTTGGTTGTCCTTTTCTGCATAGGAGGTGCAGAGGGCTTGCAAACTTGTTTGGTCGCTTTATTGTCAAGATGCTTTAAGCATGTTGGAGAATCATACATCAAAGTGCCATTCTTTGGAGCTGTTTCATACCTCACACTGGCTGTTTCTCCATTCTGCATAGCATTTGCTGTTCTTTGGGCTGTTTATCGAAACGTGTCGTTTGCCTGGATCGGTCAAGACATACTTGGAATTGCACTGATCATTACAGTTCTTCAAATAGTTCGCATACCAAATCTCAAGGTTGGAACAGTGCTGCTCAGTTGTGCCTTCCTATATGATATCTTTTGGGTCTTTGTTTCTAAGAAGTTGTTCAATGAAAGTGTGATGATTGTGGTAGCTCGTGGTGATAAAAGCGGAGAGGATGGCATCCCAATGCTGCTAAAGATCCCTCGCATGTTTGATCCATGGGGTGGTTATAGCATTATTGGATTTGGTGATATCCTTTTACCTGGACTCGTTGTAGCGTTTTCTCTCAGGTATGACTGGTTGGCAAATAAGAGCCTCCGGCTCGGTTACTTCTTACCAGCAATGCTTGCATATGGGTCAGGTCTTCTGATCACCTATGTTGCTTTGAACCTGATGGACGGTCATGGCCAGCCTGCACTGCTTTACATCGTCCCGTTTACGCTCGGAACCCTTTTGACACTGGGGAAGAAGAGAGGAGATTTGGGGATTCTGTGGACAAAAGGAGAACCAGAGAGGGCCTGCCCTCATGCCCATCTGCTCATCAATGAGGATTAA 1743 44.92 MDLQRRFLGGFVISALVLLLIFPCHVTAGDIVHHDDLTPKKPGCENDFILVCLDAYAEYFSSHLRVYCVFVSIRVKVQTWIDGKEASEFVGVGARFGATIVSKEKNANQTRLVLAHPRDCCGVPKNKLSGDIIMVDRGHCKFTTKANIAEAAGASAILILSYPLNMLVGFSELYKMVCDPDETDLDIHIPAVMLPQDAGTSLEKMLISNSSVSVQLYSPLRPPVDIAEVFLWLMAVGTILCSSFWSAWSAREAAIEQDKLLKVTFLILFAKDGADDIQNAEDVGSPGVVYINMASAVLFVVVASCFLILLYKLMSYWFIELLVVLFCIGGAEGLQTCLVALLSRCFKHVGESYIKVPFFGAVSYLTLAVSPFCIAFAVLWAVYRNVSFAWIGQDILGIALIITVLQIVRIPNLKVGTVLLSCAFLYDIFWVFVSKKLFNESVMIVVARGDKSGEDGIPMLLKIPRMFDPWGGYSIIGFGDILLPGLVVAFSLRYDWLANKSLRLGYFLPAMLAYGSGLLITYVALNLMDGHGQPALLYIVPFTLGTLLTLGKKRGDLGILWTKGEPERACPHAHLLINED 580
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
15 8901972 8909214 + CmoCh15G012970.1 Cmo15g01297 398805
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cmo15g01297 580 Pfam Signal peptide peptidase 289 565 IPR007369 GO:0004190|GO:0016021
Cmo15g01297 580 PANTHER SIGNAL PEPTIDE PEPTIDASE 70 576 IPR007369 GO:0004190|GO:0016021
Cmo15g01297 580 Gene3D - 72 219 - -
Cmo15g01297 580 SUPERFAMILY PA domain 125 167 IPR046450 -
Cmo15g01297 580 Pfam PA domain 118 202 IPR003137 -
Cmo15g01297 580 PANTHER SIGNAL PEPTIDE PEPTIDASE-LIKE 2 10 57 - -
Cmo15g01297 580 PANTHER SIGNAL PEPTIDE PEPTIDASE-LIKE 2 70 576 - -
Cmo15g01297 580 SMART psh_8 287 554 IPR006639 GO:0004190|GO:0016021
Cmo15g01297 580 PANTHER SIGNAL PEPTIDE PEPTIDASE 10 57 IPR007369 GO:0004190|GO:0016021
       

Event-related genes

Select Gene_1 Gene_2 Event_name
Cmo02g01479 Cmo15g01297 CST
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cmo15g01297 Cmo-Chr15:8901972 Cmo17g00554 Cmo-Chr17:5643411 6.73E-134 dispersed
Cmo15g01297 Cmo-Chr15:8901972 Cmo16g00127 Cmo-Chr16:572977 1.76E-21 wgd
Cmo15g01297 Cmo-Chr15:8901972 Cmo17g00413 Cmo-Chr17:2749741 1.89E-130 wgd
Cmo15g01297 Cmo-Chr15:8901972 Cmo18g01275 Cmo-Chr18:12384021 2.21E-22 wgd
Cmo15g01297 Cmo-Chr15:8901972 Cmo02g01479 Cmo-Chr2:8662590 0 wgd
Cmo15g01297 Cmo-Chr15:8901972 Cmo08g00877 Cmo-Chr8:5663352 0 wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cmo15g01297 K09597 - csv:101216966 991.49