Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cmo15g01298 ATGGAGGGCAAGGAAGAGGACGTGAAGTTAGGAGCTAACAAGTACTCCGAAAGACAGCCAATCGGCACATCAGCACAGACGGACAAGGACTACAAAGAGCCGCCGCCTGCTCCGCTGTACGAGCCCGGCGAGCTCACGTCATGGTCCTTTTACAGAGCCGGAATCGCGGAGTTCGTGGCCACTTTCTTGTTCCTGTACATTACCATCTTGACGGTGATGGGAGTCAGCCGAGCTCCGTCCAAATGCTCCACCGTCGGCATTCAGGGCATCGCGTGGGCCTTCGGTGGCATGATCTTCGCTCTCGTCTACTGTACCGCCGGCATCTCCGGTGGGCATATTAATCCGGCGGTGACATTCGGGCTTTTCTTGGCGAGAAAGCTGTCGCTCACCAGAGCCATATTCTACATCATAATGCAATGCCTAGGCGCAATCTGCGGCGCCGGCGTCGTGAAGGGTTTTGAGAAGTCCATCTACGAGCAAAAGCTTGGCGGCGCTAACTTCGTCGCCGCTGGCTACACCAAAGGCAGCGGCCTCGGCGCCGAGATCATCGGCACCTTCGTTCTGGTCTACACCGTCTTCTCCGCCACCGACGCCAAGAGAAACGCCAGAGATTCTCACGTCCCTATTTTGGCTCCTCTTCCAATTGGGTTTGCTGTGTTCTTGGTTCATTTGGCCACCATTCCGATCACCGGCACCGGCATTAACCCGGCGAGAAGTCTCGGAGCTGCCATTATCTACAACAGGGAACACGCATGGGATGACCACTGGATTTTCTGGGTGGGGCCGTTCATTGGAGCTGCTCTGGCTGCGATTTACCACCAGATCATCATCAGAGCTATTCCATTCAAGGCCAGAGCTTGA 861 55.87 MEGKEEDVKLGANKYSERQPIGTSAQTDKDYKEPPPAPLYEPGELTSWSFYRAGIAEFVATFLFLYITILTVMGVSRAPSKCSTVGIQGIAWAFGGMIFALVYCTAGISGGHINPAVTFGLFLARKLSLTRAIFYIIMQCLGAICGAGVVKGFEKSIYEQKLGGANFVAAGYTKGSGLGAEIIGTFVLVYTVFSATDAKRNARDSHVPILAPLPIGFAVFLVHLATIPITGTGINPARSLGAAIIYNREHAWDDHWIFWVGPFIGAALAAIYHQIIIRAIPFKARA 286
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
15 8913115 8914745 + CmoCh15G012980.1 Cmo15g01298 398806
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cmo15g01298 286 Gene3D Glycerol uptake facilitator protein. 37 284 IPR023271 -
Cmo15g01298 286 PANTHER AQUAPORIN OR AQUAGLYCEROPORIN RELATED 1 285 IPR034294 -
Cmo15g01298 286 MobiDBLite consensus disorder prediction 1 36 - -
Cmo15g01298 286 Pfam Major intrinsic protein 44 273 IPR000425 GO:0015267|GO:0016020|GO:0055085
Cmo15g01298 286 PANTHER AQUAPORIN PIP1-2-RELATED 1 285 - -
Cmo15g01298 286 TIGRFAM MIP: MIP family channel proteins 56 272 IPR000425 GO:0015267|GO:0016020|GO:0055085
Cmo15g01298 286 ProSitePatterns MIP family signature. 112 120 IPR022357 -
Cmo15g01298 286 CDD MIP 52 276 IPR000425 GO:0015267|GO:0016020|GO:0055085
Cmo15g01298 286 PRINTS Major intrinsic protein family signature 52 71 IPR000425 GO:0015267|GO:0016020|GO:0055085
Cmo15g01298 286 PRINTS Major intrinsic protein family signature 94 118 IPR000425 GO:0015267|GO:0016020|GO:0055085
Cmo15g01298 286 PRINTS Major intrinsic protein family signature 131 150 IPR000425 GO:0015267|GO:0016020|GO:0055085
Cmo15g01298 286 PRINTS Major intrinsic protein family signature 180 198 IPR000425 GO:0015267|GO:0016020|GO:0055085
Cmo15g01298 286 PRINTS Major intrinsic protein family signature 216 238 IPR000425 GO:0015267|GO:0016020|GO:0055085
Cmo15g01298 286 PRINTS Major intrinsic protein family signature 256 276 IPR000425 GO:0015267|GO:0016020|GO:0055085
Cmo15g01298 286 SUPERFAMILY Aquaporin-like 44 278 IPR023271 -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cmo04g01195 Cmo-Chr4:6109539 Cmo15g01298 Cmo-Chr15:8913115 0 dispersed
Cmo04g01196 Cmo-Chr4:6112222 Cmo15g01298 Cmo-Chr15:8913115 0 dispersed
Cmo15g01298 Cmo-Chr15:8913115 Cmo02g00893 Cmo-Chr2:5507658 2.13E-140 dispersed
Cmo15g01298 Cmo-Chr15:8913115 Cmo02g01479 Cmo-Chr2:8662590 6.38E-177 transposed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cmo15g01298 K09872 - csv:101217440 551.206