Gene search


Sequence information


Select Gene Cds Cds_length GC_content Pep Pep_length
Cmo15g01303 ATGGGAGGTTGCTGCTGCTGCTGTTCTTCGAAAGAATCAGAATCAAATATCGCACCAGGCTACTATTATTACCCAAGAGCATCGGAGGAGCATGTTCCCCTGTCATCTCCACTTAGTGCTCCCCCAGCATTTCCAATGGGGCTTTTAGTCGATACAAATCTGGATACATCAATCCCAGACACGTATAGATCGCCTCCCTTGCCTATGCCATATGATGTTGTTTTAACACATCCACATACTCCACCTGTGGCTCAAGAAATCTGCAGCAATAAGAATGATGCTGCAGCTCAGACTACCAATTCCGATACAATTCAAGAAACAACATGCATAAACACTCGGGAAACTTCAGCCAAATGTGAAGGCATCGACGATGAGTCAGACTGCAAGAAGCATACAGATTTTGAAGTGGACACATTAAAGGAATCTGAAATCGAACTTTCAAAGGGTGTGAAATCTGTGGTCTTACCAATTGAAGAGGAGGATGTTTGTCCCATCTGTTTGGAAGAATATGACGGAGAGAATCCAAAACTCACCACAAAATGCGAGCATCATTTTCATCTTGCATGCATTTTGGAATGGATGGAAAGAAGTGATATATGTCCTGTGTGCGATCAGGAAATGGTTTTCAGCCCTCCAATTGATTAG 645 43.1 MGGCCCCCSSKESESNIAPGYYYYPRASEEHVPLSSPLSAPPAFPMGLLVDTNLDTSIPDTYRSPPLPMPYDVVLTHPHTPPVAQEICSNKNDAAAQTTNSDTIQETTCINTRETSAKCEGIDDESDCKKHTDFEVDTLKESEIELSKGVKSVVLPIEEEDVCPICLEEYDGENPKLTTKCEHHFHLACILEWMERSDICPVCDQEMVFSPPID 214
       

Gff information


Chromosome Start End Strand Old_gene Gene Num
15 8944516 8946309 - CmoCh15G013030.1 Cmo15g01303 398811
       

Annotation information


Select Seq ID Length Analysis Description Start End IPR GO
Cmo15g01303 214 Pfam Ring finger domain 162 203 IPR001841 -
Cmo15g01303 214 SMART ring_2 163 203 IPR001841 -
Cmo15g01303 214 PANTHER ANAPHASE-PROMOTING COMPLEX SUBUNIT 11 RING-H2 FINGER PROTEIN 1 214 - -
Cmo15g01303 214 SUPERFAMILY RING/U-box 157 210 - -
Cmo15g01303 214 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 134 209 IPR013083 -
Cmo15g01303 214 ProSiteProfiles Zinc finger RING-type profile. 163 204 IPR001841 -
Cmo15g01303 214 PANTHER ZINC FINGER, RING/FYVE/PHD-TYPE 1 214 - -
       

Event-related genes


Select Gene_1 Gene_2 Event_name
Cmo02g01472 Cmo15g01303 CST
       

Duplication type information


Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cmo04g02944 Cmo-Chr4:20846871 Cmo15g01303 Cmo-Chr15:8944516 9.62E-27 dispersed
Cmo14g00378 Cmo-Chr14:1751830 Cmo15g01303 Cmo-Chr15:8944516 1.55E-11 dispersed
Cmo14g02111 Cmo-Chr14:15284957 Cmo15g01303 Cmo-Chr15:8944516 2.49E-38 dispersed
Cmo15g00232 Cmo-Chr15:1153897 Cmo15g01303 Cmo-Chr15:8944516 6.78E-27 dispersed
Cmo15g01303 Cmo-Chr15:8944516 Cmo01g01439 Cmo-Chr1:11237380 4.69E-08 dispersed
Cmo15g01303 Cmo-Chr15:8944516 Cmo02g01472 Cmo-Chr2:8638743 2.03E-131 wgd
       

Pathway information


Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cmo15g01303 - - cmos:111435815 429.869