Gene search
Sequence information
| Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
|---|---|---|---|---|---|---|
| Cmo15g01303 | ATGGGAGGTTGCTGCTGCTGCTGTTCTTCGAAAGAATCAGAATCAAATATCGCACCAGGCTACTATTATTACCCAAGAGCATCGGAGGAGCATGTTCCCCTGTCATCTCCACTTAGTGCTCCCCCAGCATTTCCAATGGGGCTTTTAGTCGATACAAATCTGGATACATCAATCCCAGACACGTATAGATCGCCTCCCTTGCCTATGCCATATGATGTTGTTTTAACACATCCACATACTCCACCTGTGGCTCAAGAAATCTGCAGCAATAAGAATGATGCTGCAGCTCAGACTACCAATTCCGATACAATTCAAGAAACAACATGCATAAACACTCGGGAAACTTCAGCCAAATGTGAAGGCATCGACGATGAGTCAGACTGCAAGAAGCATACAGATTTTGAAGTGGACACATTAAAGGAATCTGAAATCGAACTTTCAAAGGGTGTGAAATCTGTGGTCTTACCAATTGAAGAGGAGGATGTTTGTCCCATCTGTTTGGAAGAATATGACGGAGAGAATCCAAAACTCACCACAAAATGCGAGCATCATTTTCATCTTGCATGCATTTTGGAATGGATGGAAAGAAGTGATATATGTCCTGTGTGCGATCAGGAAATGGTTTTCAGCCCTCCAATTGATTAG | 645 | 43.1 | MGGCCCCCSSKESESNIAPGYYYYPRASEEHVPLSSPLSAPPAFPMGLLVDTNLDTSIPDTYRSPPLPMPYDVVLTHPHTPPVAQEICSNKNDAAAQTTNSDTIQETTCINTRETSAKCEGIDDESDCKKHTDFEVDTLKESEIELSKGVKSVVLPIEEEDVCPICLEEYDGENPKLTTKCEHHFHLACILEWMERSDICPVCDQEMVFSPPID | 214 |
Gff information
| Chromosome | Start | End | Strand | Old_gene | Gene | Num |
|---|---|---|---|---|---|---|
| 15 | 8944516 | 8946309 | - | CmoCh15G013030.1 | Cmo15g01303 | 398811 |
Annotation information
| Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
|---|---|---|---|---|---|---|---|---|
| Cmo15g01303 | 214 | Pfam | Ring finger domain | 162 | 203 | IPR001841 | - | |
| Cmo15g01303 | 214 | SMART | ring_2 | 163 | 203 | IPR001841 | - | |
| Cmo15g01303 | 214 | PANTHER | ANAPHASE-PROMOTING COMPLEX SUBUNIT 11 RING-H2 FINGER PROTEIN | 1 | 214 | - | - | |
| Cmo15g01303 | 214 | SUPERFAMILY | RING/U-box | 157 | 210 | - | - | |
| Cmo15g01303 | 214 | Gene3D | Zinc/RING finger domain, C3HC4 (zinc finger) | 134 | 209 | IPR013083 | - | |
| Cmo15g01303 | 214 | ProSiteProfiles | Zinc finger RING-type profile. | 163 | 204 | IPR001841 | - | |
| Cmo15g01303 | 214 | PANTHER | ZINC FINGER, RING/FYVE/PHD-TYPE | 1 | 214 | - | - |
Event-related genes
| Select | Gene_1 | Gene_2 | Event_name |
|---|---|---|---|
| Cmo02g01472 | Cmo15g01303 | CST |
Duplication type information
| Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
|---|---|---|---|---|---|---|
| Cmo04g02944 | Cmo-Chr4:20846871 | Cmo15g01303 | Cmo-Chr15:8944516 | 9.62E-27 | dispersed | |
| Cmo14g00378 | Cmo-Chr14:1751830 | Cmo15g01303 | Cmo-Chr15:8944516 | 1.55E-11 | dispersed | |
| Cmo14g02111 | Cmo-Chr14:15284957 | Cmo15g01303 | Cmo-Chr15:8944516 | 2.49E-38 | dispersed | |
| Cmo15g00232 | Cmo-Chr15:1153897 | Cmo15g01303 | Cmo-Chr15:8944516 | 6.78E-27 | dispersed | |
| Cmo15g01303 | Cmo-Chr15:8944516 | Cmo01g01439 | Cmo-Chr1:11237380 | 4.69E-08 | dispersed | |
| Cmo15g01303 | Cmo-Chr15:8944516 | Cmo02g01472 | Cmo-Chr2:8638743 | 2.03E-131 | wgd |
Pathway information
| Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
|---|---|---|---|---|---|---|
| Cmo15g01303 | - | - | cmos:111435815 | 429.869 |