Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cmo15g01305 ATGAGCGCGCACAACTCCAAGTATTTTTCCACCACCAAAAAGGGTGAAATCCCCGAGCTCAAAGAGGAGCTTAATTCTCAGTACAAGGATAAAAGAAAAGATGCTGTTAAAAAGGTCATTGCTGCAATGACGGTTGGGAAGGATGTATCATCACTTTTCACAGACGTGGTAAACTGCATGCAGACTGAAAATTTGGAGCTGAAAAAGCTGGTTTACTTGTATCTAATTAATTATGCCAAAAGCCAGCCTGATCTAGCCATTCTAGCAGTGAACACATTTGTTAAAGATTCACAAGATCCGAATCCTTTAATTCGTGCGTTGGCCGTAAGGACAATGGGATGCATTCGTGTGGATAAAATTACAGAATACTTGTGTGATCCTCTTCAGAGATGCCTTAAGGATGATGACCCTTATGTCCGCAAGACAGCTGCCATTTGTGTTGCCAAACTTTTTGATATAAATGCTGAGTTAGTTGAGGACAGAGGTTTTTTGGAATCTCTCAAAGACTTAATATCAGATAACAATCCAATGGTTGTTGCAAATGCCGTGGCTGCTCTTGCTGAGATACAGGAGAATAGTAGCAGATCCATCTTTGAGATCACAAGTCACACACTGTCAAAACTTCTCACAGCTTTGAATGAGTGTACTGAGTGGGGTCAAGTTTTTATACTGGACGCACTTTCTAGATTCAAAGCAGAGGATTGTCGTGAAGCAGAAAATATAATAGAGAGAGTTACTCCACGGCTACAACATGCTAACTGTGCTGTTGTTCTGTCAGCTGTGAAGATGATTCTTCAACAAATGGAACTGATCAGTAGCGCTGATGTAGTTCGAAATCTTTGCAAAAAGATGGCTCCTCCTCTTGTTACTTTGCTTTCGGCGGAACCTGAGATACAATATGTTGCATTGCGAAATATCAACCTTATAGTACAGAAACGTCCTACTATTCTTGCACATGAAATTAAGGTTTTCTTCTGTAAATACAACGATCCAATCTATGTAAAGATGGAGAAGTTAGAGATCTTGATTAAGCTTGCATCTGAACGGAATATAGACCAGGTTCTGCTGGAGTTCAAGGAGTATGCCACTGAAGTAGATGTAGATTTTGTAAGAAAAGCTGTCCGTGCCATTGGTAGGTGTGCAATCAAGCTAGAGAGAGCTGCTGAACGATGCATAAGTGTGTTGCTCGAGCTGATCAAAATTAAAGTCAACCACGTGGTTCAAGAGGCTATTATAATTATCAAGGATATTTTTAGGAGATATCCTAACACTTATGAGTCCATCATTGCAACACTCTGTGAAAGCTTAGACACGTTGGATGAGCCAGAAGCCAAGGCATCAATGATATGGATTATTGGAGAGTATGCGGAGAGAATTGACAATGCAGATGAACTTCTTGAAAGCTTCTTGGAGAATTTCCCTGAGGAACCTGCACAAGTCCAGCTTCAATTGCTGACTGCAACTGTCAAACTTTTTCTTAAGAAGCCAACCGAGGGACCACAGCAGATGATTCAGGTTGTTTTGAACAATGCTACTGTGGAGACGGACAATCCTGATCTGCGGGACCGCGCATATATCTATTGGCGACTCCTATCAACTGATCCAGAGGCAGCGAAGGATGTCGTTCTTTCCGAGAAGCCTGTGATTGGCGATGATTCAAATCTGCTTGATTCCTCGCTCCTAGATGAGCTCCTTGCCAATGTTGCCACTTTATCGTCTGTATATCACAAGCCCCCTGAAGCATTTGTTACCCGTACGAAGATTGCTCAGAGAACAGATGAAGAAGATTTTCCTGAAGGCAGTGACACAGGGTATTCAGAATCTCCTGCCCACGCTGGTGGTGCATTGCCTCCAACTACCTCAGATGCACCTAATTCAGTACCAAAGAGACTGGCCCTTGGCTTAGTTGCTCCTCCACCTCCAGTTTCAGTTCCGGATTTACTTGGTGACCTGATTGGATTGGATAATAGTGCTATTGTCCCTTTTGATCAGCCTGCTGCTTCTGCTGACCCTCCATTGCCTATCCTGCTCCCAGCATCAGCTGGTCAAGGCTTACAAATTAGTGCCCAGCTCACACGATTGGACGGTCAAGTATTTTACAGTTTATTGTTCGAGAACAATACACAGATTACATTGGATGGATTCATGATCCAGTTTAACAAGAATACGTTTGGCCTCGCCCCTGCAGGACCTTTACAGGTTCCATCGATGCAGCCTGGGTCAATTGTTAGTACTCTCCTGCCTATGGTAGTGTTCCAAAATATGTCTCAAGGTCCCCCAAGTTCACTTTTGCAGGTAGCCGTGAAGAACAATCAGCAGCCAGTGTGGTACTTCAACGATAAAATCTCAATACACGTTTTCTTCACCGATGACGGGAGGATGGAACGTGCAAACTTTCTTGAGACTTGGAGGTCCCTCCCAGATTCAAATGAAGTTTCCAAGGATTTCCCTGCCATTGTTCTAACCAATATGGAGGCTGCTCTGGAACGACTGGCTGCTACAAACATGTTCTTCATTGCTAAAAGGAAACACACAAACCAAGACGTTTTCTATTTCTCTACCAAAATTCCCAGAGGAATCCCTTTCTTGATCGAATTGACTGCGCTTATCGGAACCCCGGGACTGAAATGCGCCATCAAAACCCCGAACATTGACATGGCACCACTCCTTTTTGATGCCTTGGAGACCCTTCTCAAGGAATGA 2703 43.47 MSAHNSKYFSTTKKGEIPELKEELNSQYKDKRKDAVKKVIAAMTVGKDVSSLFTDVVNCMQTENLELKKLVYLYLINYAKSQPDLAILAVNTFVKDSQDPNPLIRALAVRTMGCIRVDKITEYLCDPLQRCLKDDDPYVRKTAAICVAKLFDINAELVEDRGFLESLKDLISDNNPMVVANAVAALAEIQENSSRSIFEITSHTLSKLLTALNECTEWGQVFILDALSRFKAEDCREAENIIERVTPRLQHANCAVVLSAVKMILQQMELISSADVVRNLCKKMAPPLVTLLSAEPEIQYVALRNINLIVQKRPTILAHEIKVFFCKYNDPIYVKMEKLEILIKLASERNIDQVLLEFKEYATEVDVDFVRKAVRAIGRCAIKLERAAERCISVLLELIKIKVNHVVQEAIIIIKDIFRRYPNTYESIIATLCESLDTLDEPEAKASMIWIIGEYAERIDNADELLESFLENFPEEPAQVQLQLLTATVKLFLKKPTEGPQQMIQVVLNNATVETDNPDLRDRAYIYWRLLSTDPEAAKDVVLSEKPVIGDDSNLLDSSLLDELLANVATLSSVYHKPPEAFVTRTKIAQRTDEEDFPEGSDTGYSESPAHAGGALPPTTSDAPNSVPKRLALGLVAPPPPVSVPDLLGDLIGLDNSAIVPFDQPAASADPPLPILLPASAGQGLQISAQLTRLDGQVFYSLLFENNTQITLDGFMIQFNKNTFGLAPAGPLQVPSMQPGSIVSTLLPMVVFQNMSQGPPSSLLQVAVKNNQQPVWYFNDKISIHVFFTDDGRMERANFLETWRSLPDSNEVSKDFPAIVLTNMEAALERLAATNMFFIAKRKHTNQDVFYFSTKIPRGIPFLIELTALIGTPGLKCAIKTPNIDMAPLLFDALETLLKE 900
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
15 8949684 8960989 - CmoCh15G013050.1 Cmo15g01305 398813

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cmo15g01305 900 PANTHER ADAPTOR COMPLEX SUBUNIT BETA FAMILY MEMBER 1 898 IPR026739 GO:0016192
Cmo15g01305 900 Pfam Beta2-adaptin appendage, C-terminal sub-domain 790 898 IPR015151 GO:0006886|GO:0016192|GO:0030131
Cmo15g01305 900 SMART alpha_adaptinc2 665 779 IPR008152 GO:0006886|GO:0016192
Cmo15g01305 900 MobiDBLite consensus disorder prediction 585 624 - -
Cmo15g01305 900 SUPERFAMILY Clathrin adaptor appendage domain 671 785 IPR013041 -
Cmo15g01305 900 SUPERFAMILY Subdomain of clathrin and coatomer appendage domain 787 899 IPR009028 GO:0006886|GO:0016192|GO:0030117
Cmo15g01305 900 PANTHER BETA-ADAPTIN-LIKE PROTEIN B 1 898 - -
Cmo15g01305 900 Pfam Adaptin N terminal region 15 533 IPR002553 GO:0006886|GO:0016192|GO:0030117
Cmo15g01305 900 Gene3D - 784 900 IPR012295 -
Cmo15g01305 900 PIRSF Beta_adaptin 1 730 IPR016342 GO:0015031|GO:0030276
Cmo15g01305 900 Pfam Adaptin C-terminal domain 683 778 IPR008152 GO:0006886|GO:0016192
Cmo15g01305 900 Gene3D - 669 782 IPR013037 GO:0006886|GO:0016192
Cmo15g01305 900 SUPERFAMILY ARM repeat 8 581 IPR016024 -
Cmo15g01305 900 Gene3D - 3 592 IPR011989 -
Cmo15g01305 900 SMART B2_adapt_app_C_2 788 899 IPR015151 GO:0006886|GO:0016192|GO:0030131
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cmo15g01305 K12392 AP1B1; AP-1 complex subunit beta-1 - csv:101215532 1621.29
       

WGDs- Genes

Select Gene_1 Gene_2 Event_name
Cmo02g01471 Cmo15g01305 CST
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cmo01g01643 Cmo-Chr1:12468563 Cmo15g01305 Cmo-Chr15:8949684 4.10E-106 dispersed
Cmo04g00213 Cmo-Chr4:1062225 Cmo15g01305 Cmo-Chr15:8949684 1.54E-27 dispersed
Cmo04g01252 Cmo-Chr4:6352501 Cmo15g01305 Cmo-Chr15:8949684 4.32E-27 dispersed
Cmo11g01883 Cmo-Chr11:13105208 Cmo15g01305 Cmo-Chr15:8949684 2.88E-26 dispersed
Cmo14g01260 Cmo-Chr14:10596850 Cmo15g01305 Cmo-Chr15:8949684 3.76E-15 dispersed
Cmo15g01305 Cmo-Chr15:8949684 Cmo20g00865 Cmo-Chr20:4366036 1.31E-13 dispersed
Cmo20g00573 Cmo-Chr20:2783257 Cmo15g01305 Cmo-Chr15:8949684 2.88E-07 dispersed
Cmo15g01305 Cmo-Chr15:8949684 Cmo02g01471 Cmo-Chr2:8630208 0 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi2g18 . . . . . . . . . . Cma02g01437 Cma15g01240 Car02g01205 Car15g01117 . . Cpe05g00350 . . . . . . . . . . . . . . Cone8ag0289 Cone12ag0295 Cone6ag0794 . . Csa05g00264 Chy09g01244 . . Blo19g00330 . . . . . . . Cmo02g01471 Cmo15g01305 . . . . . Cpe13g00145 Bhi12g00287 . . Lac11g2070 Hepe06g1527 . Lcy12g1632 Cla01g00248 Cam01g0252 Cec01g0245 Cco01g0258 Clacu01g0250 Cmu01g0240 Cre09g2268 Lsi09g00238 . . Cme09g01779
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0002730 1 2 1 1 1 2 3 2 2 2 2 2 2 2 2 2 2 2 2 2 2 1 2 2 2 2 2 2 4 1 57
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Cmo15g01305 Cmo_Chr15 FPKM 13.246097 14.690493 9.576859 10.286942 7.127884 8.006878 7.812894 6.512974 6.172367 7.028796