Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cmo15g01306 ATGGGACATGGTGATAAAGGAAGATCAAGCAAACGACCTAAATTCGGCAAGGAGGATTATAAGAAAGCTCATTTTGAAGAAGAAGATGCCTATCATTTTGAAGAGTTTGACGACGATGATCGCAATGGCGATAAAGAAGGGGGCAAGAGGGATTTCAGCAAACTAGAGTTGAAACCTGACCATACTAACCGGCCCTTATGGGCGTGTTCTGATGGCCGCATATTCCTTGAAACTTTCTCGCCCTTGTACAAACAAGCATACGATTTCCTTATTGCTATTGCGGAACCAGTTTGCAGGCCAGAATCAATGCACGAGTACAACCTCACTCCGCATTCTTTGTATGCTGCGGTTTCTGTCGGTCTGGAGACAGATACAATTATCGCAGTTCTTAGTAAGTTATCAAAGGCTAAACTCCCCAAAGAGATGATTGATTTCATTTATGCTTCTACTTCCAACTATGGCAAGGTGTTGCAGAAATTGCTCAGGGATGAGGTTATAGGCAGAGCCAGAATCATTCACGAGGATTCTCATGGAAATGGCGAGTTTACAATTAGCAAGACAGCAGGTGAACTTGGCAATCGCCATGAAGGATTGCTCAACGAGGCAGAAGCTGCAGCTGCAGCTGAGGAAAGAGAGACTCATTCATTCGAAATTGACCCAGCACAAGTTGAAAATGTTAAACAACGCTGCTTGCCCAATGCCTTAAATTATCCCATGTTGGAAGAGTACGACTTCAGAAATGACACTATCAATCCAGACTTGGATATGGAACTGAAGCCACAGGCTCAACCAAGGCCATATCAGGAAAAGAGTCTTAGTAAAATGTTTGGAAATGGTAGAGCAAGATCTGGCATTATTGTACTTCCTTGTGGAGCCGGAAAGTCTCTAGTTGGTGTTTCTGCAGCCAGTCGTATCCGGAAAAGTTGTCTGTGTTTAGCTACAAATGCTGTATCAGTGGATCAGTGGGCTTTTCAGTTTAAGTTGTGGTCTACCATTCGGGATGATCAAATTTGTCGTTTCACATCAGATAGTAAAGAAAGATTTCGAGGTAATGCTGGGGTGGTTGTTACAACCTATAACATGGTTGCTTTTGGTGGTAAAAGATCTGAAGAATCTGAAAAGATTATTGAAGAGATAAGAAATAGAGAATGGGGGCTACTTCTTATGGACGAGGTGCATGTGGTTCCTGCTCACATGTTTCGTAAGGTCATCAGCCTGACTAAGTCTCACTGCAAGCTTGGGCTCACTGCCACACTTGTCAGAGAAGATGAAAGAATTACAGATTTAAATTTCCTTATTGGTCCCAAGTTGTATGAAGCGAACTGGTTGGATCTTGTGAAAGGAGGATTTATTGCAAATGTGCAGTGTGCTGAAGTTTGGTGTCCTATGACAAAGGAGTTTTTTGCTGAATATCTGAAGAAAGAAAACTCAAAGAAAAAGCAGGCTCTTTATGTAATGAACCCCAACAAGTTCAGGGCGTGTGAGTTTCTCATACGGTTTCATGAACAGCAGCGTGGTGATAAGATAATTGTCTTTGCTGACAATCTTTTTGCTCTTACGGAGTATGCAATGAAGCTTCGTAAACCTATGATCTATGGTGCAACAAGTCATCTTGAGAGAACAAAAATTCTTGAAGCATTCAAAACTAGTCGTGACGTGAATACTGTTTTTCTCTCAAAGGTCGGTGATAACTCTATAGATATTCCCGAGGCAAATGTGATTATTCAGATTTCATCACATGCGGGTTCAAGACGTCAAGAAGCCCAACGTCTGGGACGTATTCTTAGGGCCAAGGGTAAACTTCAGGACAGGATGGCTGGGGGTAAAGAGGAGTATAATGCCTTTTTCTATTCACTTGTTTCTACTGATACACAGGAAATGTACTATTCAACTAAACGACAACAGTTTTTGATTGATCAAGGTTATAGCTTTAAGGTAATTACAAGCTTGCCACCAGCGGATGCAGGAGCTGATTTGAGCTATCATCGTCTTGATGATCAGTTGGCACTTCTCGGGAAGGTATTGAATGCAGGCGACGATATGGTAGGATTAGAGCAGTTAGAAGATGATACAGACCAAATTGCACTTGATAAGGCTCGCCGTATGACCGGATCCATGAGTGCAATGTCGGGAGCAAACGGAATGGTTTACATGGAGTACAGCACTGGACGAAAACTCGCGGGTCAAGGGCAGATGAAGAGCAAGCCAAAAGACCCGGCAAAGAGACATCATTTGTTCAAAAAGCGGTTTGCCTGA 2256 42.69 MGHGDKGRSSKRPKFGKEDYKKAHFEEEDAYHFEEFDDDDRNGDKEGGKRDFSKLELKPDHTNRPLWACSDGRIFLETFSPLYKQAYDFLIAIAEPVCRPESMHEYNLTPHSLYAAVSVGLETDTIIAVLSKLSKAKLPKEMIDFIYASTSNYGKVLQKLLRDEVIGRARIIHEDSHGNGEFTISKTAGELGNRHEGLLNEAEAAAAAEERETHSFEIDPAQVENVKQRCLPNALNYPMLEEYDFRNDTINPDLDMELKPQAQPRPYQEKSLSKMFGNGRARSGIIVLPCGAGKSLVGVSAASRIRKSCLCLATNAVSVDQWAFQFKLWSTIRDDQICRFTSDSKERFRGNAGVVVTTYNMVAFGGKRSEESEKIIEEIRNREWGLLLMDEVHVVPAHMFRKVISLTKSHCKLGLTATLVREDERITDLNFLIGPKLYEANWLDLVKGGFIANVQCAEVWCPMTKEFFAEYLKKENSKKKQALYVMNPNKFRACEFLIRFHEQQRGDKIIVFADNLFALTEYAMKLRKPMIYGATSHLERTKILEAFKTSRDVNTVFLSKVGDNSIDIPEANVIIQISSHAGSRRQEAQRLGRILRAKGKLQDRMAGGKEEYNAFFYSLVSTDTQEMYYSTKRQQFLIDQGYSFKVITSLPPADAGADLSYHRLDDQLALLGKVLNAGDDMVGLEQLEDDTDQIALDKARRMTGSMSAMSGANGMVYMEYSTGRKLAGQGQMKSKPKDPAKRHHLFKKRFA 751
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
15 8961854 8970781 + CmoCh15G013060.1 Cmo15g01306 398814

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cmo15g01306 751 PRINTS Xeroderma pigmentosum group B protein signature 276 298 - -
Cmo15g01306 751 PRINTS Xeroderma pigmentosum group B protein signature 449 471 - -
Cmo15g01306 751 PRINTS Xeroderma pigmentosum group B protein signature 383 403 - -
Cmo15g01306 751 PRINTS Xeroderma pigmentosum group B protein signature 507 529 - -
Cmo15g01306 751 PRINTS Xeroderma pigmentosum group B protein signature 64 84 - -
Cmo15g01306 751 PRINTS Xeroderma pigmentosum group B protein signature 573 598 - -
Cmo15g01306 751 PRINTS Xeroderma pigmentosum group B protein signature 554 572 - -
Cmo15g01306 751 PRINTS Xeroderma pigmentosum group B protein signature 487 502 - -
Cmo15g01306 751 PRINTS Xeroderma pigmentosum group B protein signature 701 720 - -
Cmo15g01306 751 PRINTS Xeroderma pigmentosum group B protein signature 610 633 - -
Cmo15g01306 751 PRINTS Xeroderma pigmentosum group B protein signature 245 271 - -
Cmo15g01306 751 CDD DEXHc_XPB 256 425 - -
Cmo15g01306 751 Pfam Helicase conserved C-terminal domain 66 156 IPR032830 -
Cmo15g01306 751 MobiDBLite consensus disorder prediction 737 751 - -
Cmo15g01306 751 ProSiteProfiles Superfamilies 1 and 2 helicase C-terminal domain profile. 492 658 IPR001650 -
Cmo15g01306 751 Pfam ERCC3/RAD25/XPB C-terminal helicase 445 693 IPR032438 -
Cmo15g01306 751 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 373 687 IPR027417 -
Cmo15g01306 751 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 226 439 IPR027417 -
Cmo15g01306 751 PANTHER RAD25/XP-B DNA REPAIR HELICASE 5 750 - -
Cmo15g01306 751 CDD SF2_C_XPB 456 620 - -
Cmo15g01306 751 MobiDBLite consensus disorder prediction 33 56 - -
Cmo15g01306 751 ProSiteProfiles Superfamilies 1 and 2 helicase ATP-binding type-1 domain profile. 275 437 IPR014001 -
Cmo15g01306 751 Gene3D - 254 445 IPR027417 -
Cmo15g01306 751 TIGRFAM rad25: DNA repair helicase rad25 201 748 IPR001161 GO:0003678|GO:0006289|GO:0006367
Cmo15g01306 751 MobiDBLite consensus disorder prediction 728 751 - -
Cmo15g01306 751 MobiDBLite consensus disorder prediction 1 21 - -
Cmo15g01306 751 SMART helicmild6 520 598 IPR001650 -
Cmo15g01306 751 Pfam Type III restriction enzyme, res subunit 263 419 IPR006935 GO:0003677|GO:0005524|GO:0016787
Cmo15g01306 751 Gene3D - 446 686 IPR027417 -
Cmo15g01306 751 SMART ultradead3 260 441 IPR014001 -
Cmo15g01306 751 PANTHER DNA REPAIR HELICASE XPB1-LIKE 5 750 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cmo15g01306 K10843 ERCC3, XPB; DNA excision repair protein ERCC-3 [EC:5.6.2.4] - csv:101215293 1423.68
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi2g19 . . . . . . . Bma14g00606 . . . Cma15g01241 . Car15g01118 . . . . . . . . . . . . . . . . . Cone8ag0288 Cone12ag0294 . . . Csa05g00262 Chy09g01245 . . . . . . Bpe11g00661 . . . . Cmo15g01306 . . . . . Cpe13g00144 Bhi12g00288 . . Lac11g2069 Hepe06g1526 . Lcy12g1631 Cla01g00247 Cam01g0251 Cec01g0244 Cco01g0257 Clacu01g0249 Cmu01g0239 Cre09g2269 Lsi09g00237 . . Cme09g01780
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0011686 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 30
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Cmo15g01306 Cmo_Chr15 FPKM 16.717947 16.793934 6.38197 7.254124 7.002486 7.384763 8.456659 3.415936 2.546078 3.67629