Gene search
Sequence information
| Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
|---|---|---|---|---|---|---|
| Cmo15g01308 | ATGGGCTTTCCGGCAAGCTACACTGAGCTTCTTCTTCCAAAGCTCTTCATCCACGTACTCTCCGTCCTCGGCTTCCTCAGGAAGCTTATCTCCCTTCTCTTCCGCCTCCTAGGGCTTCAAGATTTTCTCGAACCGGACATTCTCTGGCCCAATCAGTCCGATTCCTTTACTACGGGACCGTTGACGGACCTTGATCCTCTCTCCGCGGCAGTTCTCCGTGAGATTCTCCCCGTCGTGAAGTTTTCGGAGCTTTTGGATCCGCCGGAGAGCTGCGCCGTGTGCCTGTACGAGTTTGAGTCTGACGACGAGATCCGCCGCCTCGCTAACTGTCGCCATATCTTCCACCGCGGATGCCTCGATCGGTGGATCGGTTATGGACAGAGGACCTGTCCGTTGTGCCGGACGGTGTTCATTCCAGGTGATTTGCGGAGCGGTGTTTGTAATTTTGACGATAGGCTTTGGGAGGATTCGGAAATCTTTGAAGCACTCCACAGCGATTCTTCTTCTTCGACTCTTCTCTCTGCTGGTTTGTAG | 534 | 53.93 | MGFPASYTELLLPKLFIHVLSVLGFLRKLISLLFRLLGLQDFLEPDILWPNQSDSFTTGPLTDLDPLSAAVLREILPVVKFSELLDPPESCAVCLYEFESDDEIRRLANCRHIFHRGCLDRWIGYGQRTCPLCRTVFIPGDLRSGVCNFDDRLWEDSEIFEALHSDSSSSTLLSAGL | 177 |
Gff information
| Chromosome | Start | End | Strand | Old_gene | Gene | Num |
|---|---|---|---|---|---|---|
| 15 | 8984568 | 8985101 | - | CmoCh15G013080.1 | Cmo15g01308 | 398816 |
Annotation information
| Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
|---|---|---|---|---|---|---|---|---|
| Cmo15g01308 | 177 | PANTHER | BRH1 RING FINGER PROTEIN | 1 | 161 | - | - | |
| Cmo15g01308 | 177 | CDD | RING-H2 | 91 | 134 | - | - | |
| Cmo15g01308 | 177 | PANTHER | RING ZINC FINGER PROTEIN-RELATED | 1 | 161 | - | - | |
| Cmo15g01308 | 177 | SMART | ringv_2 | 90 | 134 | IPR011016 | GO:0008270 | |
| Cmo15g01308 | 177 | SUPERFAMILY | RING/U-box | 72 | 139 | - | - | |
| Cmo15g01308 | 177 | Pfam | Ring finger domain | 90 | 134 | IPR001841 | - | |
| Cmo15g01308 | 177 | ProSiteProfiles | Zinc finger RING-type profile. | 91 | 134 | IPR001841 | - | |
| Cmo15g01308 | 177 | Gene3D | Zinc/RING finger domain, C3HC4 (zinc finger) | 85 | 137 | IPR013083 | - | |
| Cmo15g01308 | 177 | SMART | ring_2 | 91 | 133 | IPR001841 | - |
Duplication type information
| Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
|---|---|---|---|---|---|---|
| Cmo03g00825 | Cmo-Chr3:6606729 | Cmo15g01308 | Cmo-Chr15:8984568 | 1.17E-14 | dispersed | |
| Cmo06g01101 | Cmo-Chr6:8482037 | Cmo15g01308 | Cmo-Chr15:8984568 | 6.06E-40 | dispersed | |
| Cmo07g00515 | Cmo-Chr7:2347362 | Cmo15g01308 | Cmo-Chr15:8984568 | 2.79E-17 | dispersed | |
| Cmo14g02114 | Cmo-Chr14:15301521 | Cmo15g01308 | Cmo-Chr15:8984568 | 7.12E-42 | dispersed | |
| Cmo15g01308 | Cmo-Chr15:8984568 | Cmo15g00336 | Cmo-Chr15:1555920 | 1.71E-14 | dispersed | |
| Cmo20g00697 | Cmo-Chr20:3455420 | Cmo15g01308 | Cmo-Chr15:8984568 | 1.42E-13 | dispersed | |
| Cmo15g01393 | Cmo-Chr15:9479006 | Cmo15g01308 | Cmo-Chr15:8984568 | 2.37E-14 | transposed | |
| Cmo15g01308 | Cmo-Chr15:8984568 | Cmo02g01469 | Cmo-Chr2:8623104 | 2.90E-109 | wgd | |
| Cmo15g01308 | Cmo-Chr15:8984568 | Cmo08g00866 | Cmo-Chr8:5598545 | 2.20E-40 | wgd |
Pathway information
| Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
|---|---|---|---|---|---|---|
| Cmo15g01308 | K16281 | - | csv:101215533 | 287.73 |