Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cmo15g01310 ATGGCTGGAGAAGACAAATCAAACGAGATGGTTGTTGGTGGATTTTATTACAATTCCAACCAGATCCAACCCGGGTTTGGATCCAGCACCGAACCGGCGGAGATATTCAATTTGCAAGTGAACAACGAGTCCGGCGGCGGCGGCGGCGGTGGTGATGATGAGTTTCATCATCACTTGATGGTGGTTGGGCCTTGGGGGACGGCGGCGGCGGCGGCGGCGGATTCGTCGTTGAGATGTGTGTTTCCATGTGAAGCAAACGAGAGACCAAGTCATGGCCTTTCTTTGTCTCTTAGTTCCACTAATCCTTCTTCTATTGGCTTACAATCCTTTGAATTAAGAACCCAACAATCATCTTCGGCCATTTTTCAGCTTCGAAACTCCAAATTCTTGGCCCCAACTCAAGAGCTTCTTTATGAGTTTTGTAGCCTTGAAATCACCAATGATATGAACAATAGGCACCAAAACCAACCCATTTCTTCTACCAACTCCTCTCTTCAATCACTTGATTTCATGGAATTGCAAAAGAGAAAAACCAAGCTTTTTTCCTTGCTTGAAGAGGTAAAATTACATAACCGCCCTTTACTTCAAATGGGTCGGAGTAAAAATCCAAACTTTAAATTCCTATGGGCCGCTCAGGGCGTTGAAAGAAGGTATAGGCATTATTGCAAGCAAATGAAGGCGGTGGTGGCGTCGTTCGAAGCGGTGGCCGGGAATGGGGCGGCGAGGGTGTACTCGGCGTTGGCATCGAAAGCGATGTCCAAGCATTTTAGGAGCCTAAAAGATGGAATTGTGGGGCAAATTCAAGCCACAAAAAAGGCAATGGGAGAAAAGGATCCAATTGCACCTGGTACCACAAGAGGAGAAACGCCAAGGCTTAGAGTGATTGATCAGGCCTTAAGGCAACAAAGAGCTTTCCATCAAATCAGTGTCATGGAAAGCCATCCTTGGCGCCCTCAACGTGGCCTCCCCGAGCGTTCTGTCTCGGTTCTTCGTGCTTGGCTTTTCGAACACTTTCTTCACCCGTACCCTAGCGATGTGGATAAACACATTTTAGCTCGCCAAACTGGTCTCTCAAGAAGCCAGGCAAGTCCCAATACAAATCTTAGAAAACCCCACATTTTTTTTTTTAATGATTTGATGAATTATAAACGTTTAAACCTCATTTTTATGAAATGGGTGTCGAATTGGTTCATTAATGCGAGGGTGAGGCTGTGGAAGCCAATGGTGGAGGAGATGTATTTAGAGGAAACAAAGGAACAAGTAGAAGAAATTGATAACACCAACTTCAACAACATGAACAACAATCGCAACAACTCTTTCGATGGGATGATGGATTTCGATGACGAGATCGACGGTCAACGATCGATCCCGACGAGGGTGGAGGATCGGAAGCCGACGTCAGACCAACTCTTAAGAATAGATTCGGAAGGTCTCTCTTCGATCATCTCTAATAACTCGGAGAAGAATGATCCAAGAGCCATGAAAGCCATGCAAAACCATCAAGGGCAACACGTCCACAACAGCCATAACCATAACTTTGGGCGCATCGCTACTGATGCATTCGGCATGGTGGAGCTCGACTTCTCGTCCTACAACCACGATAGCGGCGGAGTTTCCTCGTACCTCAACAACAACAACAATCAACATTTCAACAACGGGAGTACTAGTAGTGTGTCGTTGACATTGGGGTTACAACAACATGCAGCAGGCGGGAGGAGCGTCAGCGAAGGTGTTAGCATCGCCTTCTCGCCGGCGGCGGCCGCAGCAGCGACTCAAAGCTCCATTTTTTTCACAAGAGATCATATCGAAGAATGCCAACCAGTTCAATATTCTCTTTTAGATGGAGAAACGACTCAGAATCTTCCTTATAGAAACTTGATGGGTGCTCAATTGCTTCATGATTTGGCCGGATAA 1914 46.45 MAGEDKSNEMVVGGFYYNSNQIQPGFGSSTEPAEIFNLQVNNESGGGGGGGDDEFHHHLMVVGPWGTAAAAAADSSLRCVFPCEANERPSHGLSLSLSSTNPSSIGLQSFELRTQQSSSAIFQLRNSKFLAPTQELLYEFCSLEITNDMNNRHQNQPISSTNSSLQSLDFMELQKRKTKLFSLLEEVKLHNRPLLQMGRSKNPNFKFLWAAQGVERRYRHYCKQMKAVVASFEAVAGNGAARVYSALASKAMSKHFRSLKDGIVGQIQATKKAMGEKDPIAPGTTRGETPRLRVIDQALRQQRAFHQISVMESHPWRPQRGLPERSVSVLRAWLFEHFLHPYPSDVDKHILARQTGLSRSQASPNTNLRKPHIFFFNDLMNYKRLNLIFMKWVSNWFINARVRLWKPMVEEMYLEETKEQVEEIDNTNFNNMNNNRNNSFDGMMDFDDEIDGQRSIPTRVEDRKPTSDQLLRIDSEGLSSIISNNSEKNDPRAMKAMQNHQGQHVHNSHNHNFGRIATDAFGMVELDFSSYNHDSGGVSSYLNNNNNQHFNNGSTSSVSLTLGLQQHAAGGRSVSEGVSIAFSPAAAAAATQSSIFFTRDHIEECQPVQYSLLDGETTQNLPYRNLMGAQLLHDLAG 637
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
15 9005443 9007994 + CmoCh15G013100.1 Cmo15g01310 398818
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cmo15g01310 637 SMART prehox3 118 265 IPR006563 -
Cmo15g01310 637 SMART HOX_1 316 411 IPR001356 GO:0003677
Cmo15g01310 637 Pfam Homeobox KN domain 333 403 IPR008422 GO:0003677|GO:0006355
Cmo15g01310 637 CDD homeodomain 316 408 IPR001356 GO:0003677
Cmo15g01310 637 Pfam Associated with HOX 124 263 IPR006563 -
Cmo15g01310 637 PANTHER HOMEOBOX PROTEIN BEL1 HOMOLOG 393 581 - -
Cmo15g01310 637 PANTHER HOMEOBOX PROTEIN BEL1 HOMOLOG 71 188 - -
Cmo15g01310 637 PANTHER HOMEOBOX PROTEIN TRANSCRIPTION FACTORS 206 363 - -
Cmo15g01310 637 PANTHER HOMEOBOX PROTEIN TRANSCRIPTION FACTORS 71 188 - -
Cmo15g01310 637 PANTHER HOMEOBOX PROTEIN TRANSCRIPTION FACTORS 393 581 - -
Cmo15g01310 637 SUPERFAMILY Homeodomain-like 316 414 IPR009057 -
Cmo15g01310 637 Gene3D - 319 412 - -
Cmo15g01310 637 PANTHER HOMEOBOX PROTEIN BEL1 HOMOLOG 206 363 - -
       

Event-related genes

Select Gene_1 Gene_2 Event_name
Cmo02g01465 Cmo15g01310 CST
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cmo15g01310 Cmo-Chr15:9005443 Cmo20g01176 Cmo-Chr20:11619666 5.97E-80 dispersed
Cmo15g01310 Cmo-Chr15:9005443 Cmo02g01465 Cmo-Chr2:8606548 0 wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cmo15g01310 - - csv:101215049 805.823