Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cmo15g01328 ATGGCCCATGCAGCTCAATATTGGGCCAGCAGAAACGGAGGGGATCGACGAACAATGCCAGCCATAACTCTTTCACAGTTCACATTTCGTCCTCCTTCACCCTCTTCATCTCTCAAATCCGTACCTACTTGTTTGGTTTCTCTTAGCTCTCCTTGCAGGAAGCTGTCTTCTAAACTCTCGCTTCATGAATCTGTTCCCGTTCTTTTCAGGTTTTCAAGTGGTTGCCAGGCCACAACTCGCAAAGAGCGGTATTGGCGCAAATCAGAAGTGGTTTCGAAATATTATGATCGCCAAGAACTTCGTCGTCGTGACTTCTGCAGCTGTGAATTATCTACAAGATCAGTAACTGTTATGGATAATCCTTGGGCCTTTGAGAAGTCATTGGCAAAGGGAATTCATAAAAATATAGATAACCATGAATCTAGCAGTGCAGTCAGCAGTTCAGTTCTGAAGTTTATGCTCCTGTCTGGTTTCTTCATACTTCAAAACTCTCAGCAGGCATTAGCCGGTTCAGATGTTGCTACTGGGTTGCAGTCAGTCCCTCTTCTGGGAGACCTTGGTGATATTAGCACAGGTTTTGCTTCAGCGTTTTTGCTAATCTTTTTCTCAGAACTAGGGGACAAGACTTTTTTCATTGCAGCTCTTCTAGCAGCTAGGAACTCTGCTGCTATTGTTTTTGCTGGAACTTTTGGTGCACTTGCGGTAATGACCATCATATCTGTTGTTCTTGGACGAACTTTTCACTATGTTGATGAGGTTCTTCCATTCAGGCTTGGTGGTAGTGATTTACCAGTTGATGATATTGCAGCTGTCTGTCTTTTGGTGTATTTTGGAGTTACGACTTTGCTTGATGCCAGCTCAAGCGATGGACTAAAGGCAGAAGATGAGCAGAAGGAGGCAGAGTTGGCTGTCTCAAAGTTCTCAGGAAATGGTGCTGGGATATTAGCTGCTGCCAGTACTGTCGTCAGCACCTTTGCATTAGTATTTGTTGCTGAGTGGGGCGACAAGTCATTTTTCTCTACAATTGCCCTTGCTGCTGCTTCTTCACCCCTCGGAGTCATTGGAGGTGCACTAGCTGGTCATGGTGTTGCAACATTGCTTGCAGTTCTAGGCGGTTCTTTGCTAGGGACATTTTTATCAGAGAAGATTATTGCATATGTTGGAGGTGTTCTTTTTCTCGTCTTCGCTGCCGTAACTTTAGTCGAGATAGTAAACTAG 1218 44.66 MAHAAQYWASRNGGDRRTMPAITLSQFTFRPPSPSSSLKSVPTCLVSLSSPCRKLSSKLSLHESVPVLFRFSSGCQATTRKERYWRKSEVVSKYYDRQELRRRDFCSCELSTRSVTVMDNPWAFEKSLAKGIHKNIDNHESSSAVSSSVLKFMLLSGFFILQNSQQALAGSDVATGLQSVPLLGDLGDISTGFASAFLLIFFSELGDKTFFIAALLAARNSAAIVFAGTFGALAVMTIISVVLGRTFHYVDEVLPFRLGGSDLPVDDIAAVCLLVYFGVTTLLDASSSDGLKAEDEQKEAELAVSKFSGNGAGILAAASTVVSTFALVFVAEWGDKSFFSTIALAAASSPLGVIGGALAGHGVATLLAVLGGSLLGTFLSEKIIAYVGGVLFLVFAAVTLVEIVN 405
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
15 9105487 9113613 - CmoCh15G013280.1 Cmo15g01328 398836

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cmo15g01328 405 PANTHER PROTEIN PAM71, CHLOROPLASTIC 97 405 - -
Cmo15g01328 405 Pfam Uncharacterized protein family UPF0016 195 278 IPR001727 -
Cmo15g01328 405 Pfam Uncharacterized protein family UPF0016 323 396 IPR001727 -
Cmo15g01328 405 ProSitePatterns Uncharacterized protein family UPF0016 signature. 204 213 IPR001727 -
Cmo15g01328 405 PANTHER TRANSMEMBRANE PROTEIN HTP-1 RELATED 97 405 IPR001727 -
Cmo15g01328 405 Coils Coil 405 405 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cmo15g01328 - - - cpep:111808640 615.92
       

WGDs- Genes

Select Gene_1 Gene_2 Event_name
Cmo02g01441 Cmo15g01328 CST
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cmo06g01279 Cmo-Chr6:9660025 Cmo15g01328 Cmo-Chr15:9105487 7.20E-51 dispersed
Cmo15g00947 Cmo-Chr15:4874179 Cmo15g01328 Cmo-Chr15:9105487 1.17E-24 dispersed
Cmo15g01328 Cmo-Chr15:9105487 Cmo02g01441 Cmo-Chr2:8501254 4.13E-77 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi2g70 . . . . . . . Bma14g00621 . . Cma02g01412 Cma15g01259 Car02g01183 Car15g01136 . . . . . . . . . . . . . . . . . Cone8ag0265 Cone12ag0270 . . . Csa05g00225 Chy09g01275 . . . . . . Bpe11g00647 . . . Cmo02g01441 Cmo15g01328 . . . . . . Bhi12g00170 . . Lac11g2031 Hepe06g1500 . Lcy12g1593 Cla01g00208 Cam01g0213 Cec01g0208 Cco01g0211 Clacu01g0208 Cmu01g0203 Cre09g2304 Lsi09g00196 . . Cme09g01818
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0008642 0 2 1 1 1 1 2 1 1 1 1 1 2 1 1 2 1 2 0 1 1 1 1 1 1 1 1 1 3 1 35
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Cmo15g01328 Cmo_Chr15 FPKM 15.450801 15.788521 9.110372 8.522764 18.658136 19.559097 18.304474 1.631205 2.036968 2.054073