Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cmo15g01332 ATGGAAGCTCTGTGGATTATCAGCTTCGTTTTGGTTCTGGGGTTGGTTTTTTCCCCAAGTAATGGCGACCCAGTTCAAGATAAGCGAGCTCTGCTTGATTTTGTCAAGAAGCTTCCTCACTCTCGCTCTCTTAATTGGAATGTGACTTCTCCGGTTTGCCATTACTGGACTGGTATAACTTGCAGTGATGATGAATCTCGTGTTATAGCCGTTCGATTGCCCGGAGTTGGCTTCCACGGCCCGATTCCGGCGAACACTCTCAGCCGGCTCACGGGGCTGCAAATTTTGAGTCTCAGATCCAATCGTATAACAGGGGATTTCCCTTCGGATTTCTCTAATCTTAGTAACTTGTCTTATCTTTATCTTCAGTTCAATAACTTCTCTGGGCCATTGCCTTCAAACTTCTCTGTCTGGAAGAATCTCACCTTTGTGAACCTCTCTAACAATGGCTTCAATGGCAGCATACCCTTTTCACTTTCTAATATGACAGAGCTTACTGGTTTGAATTTGGCAAACAACTCTCTCTCAGGGGAAATCCCTGACCTCCAAATGCCCAAATTGCAGATTCTGAATTTATCCAACAACAATTTGAGTGGGAGTTTGCCTAAATCTTTACAGAGATTTCCAAGTTCTTCATTTCTAGGCAATAACATATCCTTCGAAAGTTCTTCACCGAACAATCCTCCCGTGCCACCGACGTTGCTCGTGTCGAATGATAAGCCGAAGAATTCCAAAGGGCTTAGAGAAGCAGCATTGTTAGGAATCATAATTGCTGGTGGTCTTTTGGGGCTTCTGGCTTTTGGCTTTCTAATACTTGTTTGCTTCTCAAGAAGGAAGAGTAAGGACGACGAGTATTCCGGGGATCGGCAGAAAGGTCGAATGTCGCCGGAGAAGGTGATATCGAGGACTCAAGATGCAAATAATAGATTGGTTTTCTTTGAGGGCTGCCATTATGCTTTTGATTTGGAGGATTTATTGAGGGCTTCTGCTGAGGTTTTGGGGAAGGGAACTTTTGGGACTGCTTATAAAGCAATTCTGGAGGATGCTACTACTGTTGTTGTTAAGAGGTTGAAGGATGTTAACGCCGGGAAGCGCGATTTCGAGCAGCAAATGGAGATTGTTGGCGGTATCAGGCATGAGAATGTGGTTGAGTTGAAGGCTTACTATTATTCCAAAGATGAGAAGCTGATGGTTTATGATTTCTTTAGTCAGGGAAGCGTCTCGGCTATGTTGCACGGTAAACGTGGAGAGGAAAAGACCCCATTAGATTGGGACAGTAGACTGAGAATTGCAGTAGGTGCAGCACGAGGAATCGCTCGTGTCCATGCCGAAAACGGAGGGAAGCTCGTCCATGGAAATGTAAAATCCTCGAACATCTTTCTGAACTCTCGACAGTACGGATGTGTGTCTGATCTTGGACTAGCAACCATAACAAGCTCGCTCGCTCCACCTATATCCCGTGCTGCTGGTTACCGAGCCCCGGAAGTGACAGACACCCGCAAGGCCACACAGGCATCAGATGTTTTCAGCTTCGGCGTCGTGCTTCTCGAGCTTCTAACCGGAAAGTCCCCAATACACGCCACAGGCGGCGAAGAAATCGTACACTTGGTTAGATGGGTTCATTCAGTTGTCCGTGAGGAGTGGACAGCTGAGGTATTTGATGTAGAGCTGATGAGGTATCCCAACATAGAGGAAGAAATGGTTGAAATGTTACAAATAGCCTTATCATGTGTGACCAGGATACCAGATCAGAGACCGAAAATGTCAGAAATCGTGACGATGATCGAAAGCGTTCGACCAATGGAAGCAGAGAATCGACGTTCTTCCACCACTCGATCTGAAAGTTCAATGCCGCCGCCGCCTCCACCGCCGCCACAAGCTGTCGTGACAGAGAATTCAACCTCTCAGCAAAACAACAAACACGCAGGAGGATCTCAAGAGATTCCACTCTTTTGGATTTTGGTGATGGCTTCGAAGCGGATCTTGAAAGAGCTCAAGGATCTCCAGAAGGATCCTCCTACCTCTTGCAGTGCAGGCCCAGTAGCTGAAGACATGTTCCATTGGCAAGCAACAATAATGGGTCCTCCTGACAGTCCATATGCAGGAGGAGTGTTTCTTGTCAACATTCATTTCCCTCCAGATTATCCATTTAAACCACCCAAGGTTGCATTCAGAACAAAGGTCTTCCATCCCAATATCAACAGCAACGGCAGCATATGCCTTGACATACTTAAGGAACAGTGGAGTCCTGCATTAACCATTTCCAAGGTGTTACTTTCGATCTGCTCGCTGCTAACAGACCCGAATCCTGATGACCCTTTGGTGCCAGAGATCGCGCACATGTACAAGACTGACAGAAGCAAGTACGAGGCAACTGCGAGAAGCTGGACCCAGAAGGATTCTTTCCCAAATGGCTTTTACTTGAATTTAATATGGTTGAATCTGCTGCCTCTTTTATCCAATGGGTTTAGTTATGTTTCCCTCCTGAAAACGCTGCCTGTTCTAAACCTGTTTGTATGGATAAACAAATTTATCTTTAATCTTCAGAGTTTATTCCAATAA 2562 45.86 MEALWIISFVLVLGLVFSPSNGDPVQDKRALLDFVKKLPHSRSLNWNVTSPVCHYWTGITCSDDESRVIAVRLPGVGFHGPIPANTLSRLTGLQILSLRSNRITGDFPSDFSNLSNLSYLYLQFNNFSGPLPSNFSVWKNLTFVNLSNNGFNGSIPFSLSNMTELTGLNLANNSLSGEIPDLQMPKLQILNLSNNNLSGSLPKSLQRFPSSSFLGNNISFESSSPNNPPVPPTLLVSNDKPKNSKGLREAALLGIIIAGGLLGLLAFGFLILVCFSRRKSKDDEYSGDRQKGRMSPEKVISRTQDANNRLVFFEGCHYAFDLEDLLRASAEVLGKGTFGTAYKAILEDATTVVVKRLKDVNAGKRDFEQQMEIVGGIRHENVVELKAYYYSKDEKLMVYDFFSQGSVSAMLHGKRGEEKTPLDWDSRLRIAVGAARGIARVHAENGGKLVHGNVKSSNIFLNSRQYGCVSDLGLATITSSLAPPISRAAGYRAPEVTDTRKATQASDVFSFGVVLLELLTGKSPIHATGGEEIVHLVRWVHSVVREEWTAEVFDVELMRYPNIEEEMVEMLQIALSCVTRIPDQRPKMSEIVTMIESVRPMEAENRRSSTTRSESSMPPPPPPPPQAVVTENSTSQQNNKHAGGSQEIPLFWILVMASKRILKELKDLQKDPPTSCSAGPVAEDMFHWQATIMGPPDSPYAGGVFLVNIHFPPDYPFKPPKVAFRTKVFHPNINSNGSICLDILKEQWSPALTISKVLLSICSLLTDPNPDDPLVPEIAHMYKTDRSKYEATARSWTQKDSFPNGFYLNLIWLNLLPLLSNGFSYVSLLKTLPVLNLFVWINKFIFNLQSLFQ 853
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
15 9137087 9146807 + CmoCh15G013320.1 Cmo15g01332 398840
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cmo15g01332 853 ProSiteProfiles Ubiquitin-conjugating (UBC) core domain profile. 656 802 IPR000608 -
Cmo15g01332 853 Pfam Leucine rich repeat N-terminal domain 26 62 IPR013210 -
Cmo15g01332 853 Gene3D Transferase(Phosphotransferase) domain 1 402 617 - -
Cmo15g01332 853 PANTHER OS05G0588300 PROTEIN 21 607 - -
Cmo15g01332 853 Gene3D Ribonuclease Inhibitor 25 236 IPR032675 -
Cmo15g01332 853 Gene3D Ubiquitin Conjugating Enzyme 638 799 IPR016135 -
Cmo15g01332 853 ProSitePatterns Protein kinases ATP-binding region signature. 333 355 IPR017441 GO:0005524
Cmo15g01332 853 SUPERFAMILY UBC-like 652 799 IPR016135 -
Cmo15g01332 853 PANTHER PROTEIN, PUTATIVE-RELATED 21 607 - -
Cmo15g01332 853 Pfam Ubiquitin-conjugating enzyme 660 796 IPR000608 -
Cmo15g01332 853 SUPERFAMILY Protein kinase-like (PK-like) 331 628 IPR011009 -
Cmo15g01332 853 ProSitePatterns Ubiquitin-conjugating (UBC) active site signature. 729 744 IPR023313 -
Cmo15g01332 853 SUPERFAMILY L domain-like 37 211 - -
Cmo15g01332 853 CDD UBCc 658 797 IPR000608 -
Cmo15g01332 853 MobiDBLite consensus disorder prediction 594 643 - -
Cmo15g01332 853 MobiDBLite consensus disorder prediction 629 643 - -
Cmo15g01332 853 Gene3D Phosphorylase Kinase; domain 1 294 401 - -
Cmo15g01332 853 Pfam Leucine rich repeat 82 127 IPR001611 GO:0005515
Cmo15g01332 853 ProSiteProfiles Protein kinase domain profile. 327 598 IPR000719 GO:0004672|GO:0005524|GO:0006468
Cmo15g01332 853 SMART ubc_7 659 802 - -
Cmo15g01332 853 Pfam Protein tyrosine and serine/threonine kinase 331 594 IPR001245 GO:0004672|GO:0006468
       

Event-related genes

Select Gene_1 Gene_2 Event_name
Cmo02g01122 Cmo15g01332 CST
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cmo15g01332 Cmo-Chr15:9137087 Cmo20g00327 Cmo-Chr20:1600161 0 dispersed
Cmo02g01438 Cmo-Chr2:8481763 Cmo15g01332 Cmo-Chr15:9137087 0 transposed
Cmo15g01332 Cmo-Chr15:9137087 Cmo16g00084 Cmo-Chr16:387197 0 wgd
Cmo15g01332 Cmo-Chr15:9137087 Cmo18g01322 Cmo-Chr18:12578033 0 wgd
Cmo15g01332 Cmo-Chr15:9137087 Cmo02g01437 Cmo-Chr2:8475644 8.17E-101 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
74930 PF07714 PK_Tyr_Ser-Thr 8.70E-34 CL0016 Cmo PK
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cmo15g01332 - - cpep:111808460 1134.01