Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cmo15g01339 ATGGAAGAAGTGAGTGAGGAAATGACGCTATTGGATGCGGCGGAGGATGCACATGTCCAAAATAAGGTTAGGCAAGATGCTCAGGAGAATGAGTTTTCACTGAAACCTGAAAATACCAATGTGGTTGAATCACAAGAAATGCTTATTCCCATTGACGGTGGCTATTCACAGGATTATCCTCATGAATTTACTGAAATTTTAGAGGGTAAGAATCTGAGTAGGTGTAAAAACACTGTGAAGTTATCTGATCAACCAGAGTGCAGTCCTCAGTGTATGGATGATGCTGGCGTAATGGTTGAAGAGCTAACTGTGAAAAATCAGAACGATTCCAATTTAGCAATTATTGGTCCATCGAACAATAGAGCACGACTGCTTTCTAGGCATAATCAGTGGCAGCATCTTTACCAGCTGGCAAGTGGTTCAGGCAGTGGGAGTTCACGTATGGATACTTCTTACAAGAACAATGGTCAGACAGTAACCCCTGGCATAGAGACCGGTGGGTACACATCTTTTCCTGAGGCTTTCGCTGGAAGAGCCAATCGTAATGATTGTGGAGAGAAATTGGAAGAAACGAAGGCTATTGACAATAAGGGTGGTGATGCTCATGGCAGCATTCGGACCAAGATTCTATCAAAATCGGGCTTTCCTGAATTTTTTGTTAAAAATACCTTGAAGGGGAAGGGAATCATTCGTAGAGGTATACCACTGGAGGGCTTTAATGTAGAACATAGAAACCCTAAGAATGCAAGGAATGCTGGTGGCATTACATTGGCATCTGACTCATCATTACAGCATGACGTTAAGCCTGTCATACCCTCCTTGAATAGGAAATCTGAGCGTAAATTTCGGGGTTCTGCTTTAGATGGCATTAGTCTGAGAGATTGGCTTAAAGTTCCCCACCACAAAGTAAATAAAAGCGAATGCTTGTATATATTTAAGCACGTAGTGGAGCTGGTGGATCGTTATCATGCACGGGGGGTTTTGTTGCATGACTTACGTCCATGTTCTTTCAGGATATTGACGACGAACGAGATAAGGTACTTTGGAACTTTTATTCAATTAAAAACAGCGGAAAGTCTAATGGTTAAAGATAGTCAGTGTTCAGATAGCCATCAGACTCAGAAAAGGCCGTTAGAGCAAGGGAACTTTCTGTCATTTGGTGTATCTCCAAAAAAACAAAAAGATGTCCAGAATATGAGTCTTATGGCCCAACATCCTCACTTTCCTTCAGAATCTGGTGTCAATCTTGAAACTGCAAATACGAGGGTCTGCAATAAGAATGCTTCGGAAAATTATAATGAACATTTTGCTGAACAGGGGGTTAGGAGCAAGCCTGCTGGCCCTTGTGCATACGATTCTTCCCTGACTCCAATAAGTGGCCTATTGGAAGAGAAGTGGTATGCAAGTCCAGAGGAACTTAATGCAGGATGCTGCTCACCTAAATCAAATATATTCTCTCTTGGTGTTCTTCTTTTTGAGTTACTTGGAAAGTTTGAATCAGATGGCGCACTTGTTGCAGCTATGTCAAATTTGAGGGAGAGGATTCTTCCGCCTAACTTTCTAGCAGATAATTTGAAGGAAGTTGGGTTTTGTCTTTGGCTACTTCATCCTGAGCCTGCATCTCGTCCAACCACAAGGGAGATTTTAGAATCAGAACTAATCAATGGAATAGCAAATGTTCCGGCACCAGAGCTTTCAACATCTATTGACGAGGAAGATGCTGAATCAGAGTTATTATTGCAGTTCCTCACATCATTGAATGAACAAAAGCGGAAACATGCCTCAAAGTTGATGGAAGACATACGGTATTTAGAATCAGATATTGAAGAAGTCAATAAAAGGCACAGTTCAGCCAAAGCCTTGGATAAATCTAGCTTGTCTAATACCGTGAATGGAAGGGATAGTTCGATCTATCATGGAGGATGTCTAAACTCAGATGGGTTCTCGCAGGTGTATACAATATCACATATCAATGAAGAGAGAATTGTAAAAAATATAAGTCAGCTTGAAAGTGCTTATTTTTCCATGAGATCAAAAGTAGATCCTTCTAAGAATGACCCAGCAATTCGGACAGATAAAGATTTACTGAGAGCTCGTGAAAACTGCTATCTACTACAAAAAGATGATGAGAGGAGTCACGGTGATCGTCTGGGTGCCTTTTTTGATGGGTTTTGCAAGTATTCTCGCTATTGCAAGTTCGAAGTATGTGGGGTACTGAGAAACGGTGATTTTAACAGTTCCTCAAATGTAATCTGTTCCTTGAGTTTTGATCGGGATGAGGACTATTTTGCTGCTGCTGGAGTGTCAAAGAAAATAAGGATTTTTGAGTTCAACTCACTCTTTAGTGATTCGGTCGATATTCACTATCCCGCAGTTGAAATGTTTAATAGATCAAAGCTTAGCTGTGTTTGCTGGAATAGCTACATCAGGAATTATCTGGCTTCAACTGACTACGACGGTGTGGTTAAGTTGTGGGATGCAACTGTAGGTCAAGAGGTTTCTCAATTCAAAGAACACGAGAAGAGGGCGTGGTCCGTTGACTTTTCACAAGTTCATCCTACAAAATTGGCCAGTGGAAGTGACGATTGTGCTGTAAAACTTTGGGGCATAAATGAGAAAAAATGTTTGGGCACAATCAGGAACATAGCAAATGTCTGCTGTGTTCAGTTCTCTGCTCACTCAACTCATTTGCTAGCTTTTGGGTCTGCCGATTACAGAACCTATTGCTTTGATCTACGTAATACTAAAGCCCCCTGGTGTGTGTTGGGTGGGCATGAGAAAGCTGTAAGCTATGTGAAATTCTTGGACTCGGAGACCCTTGTTTCTGCGTCCACAGACAACACATTGAAGCTGTGGGATCTTAATAGAACCAATCCTACTGGCTTGTCTACCAATCCTTGTAGTTTAACTCTCAGTGGCCACACTAATGAAAAAAATTTCGTGGGTCTATCCGTTTTCGATGGCTACATCGCTTGTGGTTCAGAAACAAATGAAGTATATGCTTACCATAGATCTCTGCCCATGCCAATGACTTCCTACAAGTTCGGTTCTGTCGACCCTATTTCGGGTAAAGAGACGGAGGACGACAATGGACAATTCGTTTCAAGTGTATGCTGGAGAGGAAAATCTGACATGGTTGTTGCAGCCAACTCAAGCGGGTGTATAAAAGTACTGCAAATGGTTTGA 3186 41.71 MEEVSEEMTLLDAAEDAHVQNKVRQDAQENEFSLKPENTNVVESQEMLIPIDGGYSQDYPHEFTEILEGKNLSRCKNTVKLSDQPECSPQCMDDAGVMVEELTVKNQNDSNLAIIGPSNNRARLLSRHNQWQHLYQLASGSGSGSSRMDTSYKNNGQTVTPGIETGGYTSFPEAFAGRANRNDCGEKLEETKAIDNKGGDAHGSIRTKILSKSGFPEFFVKNTLKGKGIIRRGIPLEGFNVEHRNPKNARNAGGITLASDSSLQHDVKPVIPSLNRKSERKFRGSALDGISLRDWLKVPHHKVNKSECLYIFKHVVELVDRYHARGVLLHDLRPCSFRILTTNEIRYFGTFIQLKTAESLMVKDSQCSDSHQTQKRPLEQGNFLSFGVSPKKQKDVQNMSLMAQHPHFPSESGVNLETANTRVCNKNASENYNEHFAEQGVRSKPAGPCAYDSSLTPISGLLEEKWYASPEELNAGCCSPKSNIFSLGVLLFELLGKFESDGALVAAMSNLRERILPPNFLADNLKEVGFCLWLLHPEPASRPTTREILESELINGIANVPAPELSTSIDEEDAESELLLQFLTSLNEQKRKHASKLMEDIRYLESDIEEVNKRHSSAKALDKSSLSNTVNGRDSSIYHGGCLNSDGFSQVYTISHINEERIVKNISQLESAYFSMRSKVDPSKNDPAIRTDKDLLRARENCYLLQKDDERSHGDRLGAFFDGFCKYSRYCKFEVCGVLRNGDFNSSSNVICSLSFDRDEDYFAAAGVSKKIRIFEFNSLFSDSVDIHYPAVEMFNRSKLSCVCWNSYIRNYLASTDYDGVVKLWDATVGQEVSQFKEHEKRAWSVDFSQVHPTKLASGSDDCAVKLWGINEKKCLGTIRNIANVCCVQFSAHSTHLLAFGSADYRTYCFDLRNTKAPWCVLGGHEKAVSYVKFLDSETLVSASTDNTLKLWDLNRTNPTGLSTNPCSLTLSGHTNEKNFVGLSVFDGYIACGSETNEVYAYHRSLPMPMTSYKFGSVDPISGKETEDDNGQFVSSVCWRGKSDMVVAANSSGCIKVLQMV 1061
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
15 9165497 9173980 - CmoCh15G013390.1 Cmo15g01339 398847

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cmo15g01339 1061 ProSiteProfiles Trp-Asp (WD) repeats profile. 811 835 IPR001680 GO:0005515
Cmo15g01339 1061 SUPERFAMILY Protein kinase-like (PK-like) 289 559 IPR011009 -
Cmo15g01339 1061 PRINTS G protein beta WD-40 repeat signature 813 827 IPR020472 -
Cmo15g01339 1061 PRINTS G protein beta WD-40 repeat signature 856 870 IPR020472 -
Cmo15g01339 1061 PRINTS G protein beta WD-40 repeat signature 940 954 IPR020472 -
Cmo15g01339 1061 PANTHER PROTEIN SPA1-RELATED 2 3 1061 IPR044630 GO:0009640
Cmo15g01339 1061 Gene3D Transferase(Phosphotransferase) domain 1 289 566 - -
Cmo15g01339 1061 Pfam WD domain, G-beta repeat 830 868 IPR001680 GO:0005515
Cmo15g01339 1061 Pfam WD domain, G-beta repeat 921 953 IPR001680 GO:0005515
Cmo15g01339 1061 ProSiteProfiles Protein kinase domain profile. 191 554 IPR000719 GO:0004672|GO:0005524|GO:0006468
Cmo15g01339 1061 SUPERFAMILY WD40 repeat-like 747 1058 IPR036322 GO:0005515
Cmo15g01339 1061 SMART WD40_4 872 911 IPR001680 GO:0005515
Cmo15g01339 1061 SMART WD40_4 964 1003 IPR001680 GO:0005515
Cmo15g01339 1061 SMART WD40_4 732 776 IPR001680 GO:0005515
Cmo15g01339 1061 SMART WD40_4 915 953 IPR001680 GO:0005515
Cmo15g01339 1061 SMART WD40_4 788 826 IPR001680 GO:0005515
Cmo15g01339 1061 SMART WD40_4 1020 1059 IPR001680 GO:0005515
Cmo15g01339 1061 SMART WD40_4 829 869 IPR001680 GO:0005515
Cmo15g01339 1061 Coils Coil 594 614 - -
Cmo15g01339 1061 Gene3D - 720 1061 IPR015943 GO:0005515
Cmo15g01339 1061 PANTHER PROTEIN SPA1-RELATED 2 3 1061 - -
Cmo15g01339 1061 ProSiteProfiles Trp-Asp (WD) repeats circular profile. 922 955 - -
Cmo15g01339 1061 ProSiteProfiles Trp-Asp (WD) repeats profile. 836 878 IPR001680 GO:0005515
Cmo15g01339 1061 ProSitePatterns Trp-Asp (WD) repeats signature. 940 954 IPR019775 -
Cmo15g01339 1061 ProSiteProfiles Trp-Asp (WD) repeats profile. 922 962 IPR001680 GO:0005515
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cmo15g01339 K16240 SPA1; protein suppressor of PHYA-105 1 - csv:101211350 1866.28
       

WGDs- Genes

Select Gene_1 Gene_2 Event_name
Cmo02g01431 Cmo15g01339 CST
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cmo01g01262 Cmo-Chr1:10107433 Cmo15g01339 Cmo-Chr15:9165497 0 dispersed
Cmo09g00854 Cmo-Chr9:4399282 Cmo15g01339 Cmo-Chr15:9165497 0 dispersed
Cmo15g01339 Cmo-Chr15:9165497 Cmo20g00256 Cmo-Chr20:1240027 2.07E-106 dispersed
Cmo15g01339 Cmo-Chr15:9165497 Cmo02g01431 Cmo-Chr2:8450975 0 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi2g105 . . . . . . . Bma14g00626 . . Cma02g01396 Cma15g01269 Car02g01175 Car15g01144 . . Cpe05g00378 . . . . . . . . . . . . . . Cone8ag0255 Cone12ag0261 . . . Csa05g00216 Chy09g01283 . . . Bda07g00466 . . Bpe11g00642 . . . Cmo02g01431 Cmo15g01339 . . . . . Cpe13g00119 Bhi12g00161 . . Lac11g2015 Hepe06g1490 . Lcy12g1581 Cla01g00199 Cam01g0205 Cec01g0199 Cco01g0204 Clacu01g0201 Cmu01g0197 Cre09g2310 Lsi09g00187 . . Cme09g01828
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0005844 1 1 1 1 1 1 2 1 1 1 1 1 2 1 1 2 1 2 2 1 1 1 1 1 1 1 1 4 1 2 39
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Cmo15g01339 Cmo_Chr15 FPKM 12.995 11.002338 1.421672 1.102338 43.999737 42.915123 41.468315 0.0 0.0 0.0