Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cmo15g01353 ATGGCTGGCTCCTGGAGAGCTCGAGGGTCTCTGATCGTGTTGGCAATTCTTTTCTTCGGAGGCCTATTCGCAATTTCAATCGCGAAGGAGGAAGCAACAAAATTGGGGACTGTCATTGGGATAGATTTGGGAACAACTTACTCTTGTGTTGGAGTGTACAAGAATGGACACGTAGAAATTATAGCGAATGATCAAGGAAACCGTATCACCCCTTCTTGGGTAGCTTTCACTGATACTGAGAGATTGATCGGTGAGGCTGCCAAGAATCAAGCAGCTGTCAACCCTGAAAGGACAGTTTTTGATGTCAAGAGACTTATTGGTAGAAAGTTTGATGATAAAGAGGTTCAGAAAGACATGAAGCTTGTTCCTTATAAGATTGTGAACAAGGATGGAAAGCCTTACATTCAAGTGAAAATCAAGGATGGTGAGACCAAGGTTTTCAGCCCTGAGGAGGTCAGTGCCATGATTCTCACTAAGATGAAGGAAACAGCCGAAGCATTCCTTGGCAAGAAAATCAAGGACGCCGTTGTCACTGTTCCAGCTTACTTCAATGATGCCCAAAGGCAAGCAACCAAGGATGCCGGTATTATCGCTGGTCTCAACGTTGCTAGGATCATCAATGAGCCTACTGCTGCTGCCATTGCGTATGGTTTGGACAAGAAAGGTGGCGAGAAGAACATTCTTGTGTTTGATCTTGGTGGTGGTACTTTCGATGTCAGTATCTTGACCATCGACAATGGTGTTTTTGAGGTTCTTGCCACAAACGGTGACACTCACTTGGGAGGTGAGGACTTTGACCAGAGAATCATGGAATACTTCATCAAATTGATTAAGAAGAAGCACGGAAAGGACATCAGCAAGGACAACAGAGCTCTTGGAAAGCTTAGAAGGGAAGCTGAGCGTGCCAAGAGGGCATTGAGTAGCCAGCACCAGGTCCGTGTTGAGATTGAATCCCTCTTTGATGGTACTGACTTCTCCGAGCCATTGACCAGAGCTCGGTTCGAGGAGTTGAACAATGACTTGTTCAGAAAGACCATGGGACCAGTGAAGAAAGCCATGGAAGATGCAGGTTTGCAGAAGAACCAAATCGACGAGATTGTCCTTGTTGGTGGTAGCACCAGGATTCCCAAAGTTCAACAGCTCCTCAAAGATTACTTCGACGGCAAGGAACCCAACAAGGGTGTCAACCCTGATGAGGCCGTTGCTTATGGTGCTGCTGTTCAAGGAAGCATCTTGAGTGGAGAGGGTGGTGAAGAAACCAAGGATATCCTTCTTCTCGACGTTGCGCCCCTTACCCTCGGAATCGAGACTGTTGGTGGAGTTATGACCAAGTTGATCCCCAGAAACACTGTCATCCCAACAAAGAAATCTCAGGTTTTCACCACTTACCAAGATCAGCAAACCACCGTCTCCATTCAGGTCTTCGAAGGTGAGAGGAGTCTCACTAAAGACTGCAGGAACCTTGGCAAATTCGATCTAACTGGCATTCCTCCAGCACCAAGGGGTACCCCACAAATTGAGGTCACCTTTGAGGTTGATGCCAATGGTATCCTAAACGTGAAGGCTGAAGACAAGGGAACTGGTAAATCCGAGAAGATCACCATTACCAACGACAAGGGTCGATTGAGTCAGGAGGAGATCGACCGGATGGTTCGTGAAGCTGAGGAGTTTGCAGAGGAGGACAAGAAGGTGAAGGAGAGGATTGACGCCCGCAACAGCTTGGAAACGTATGTCTACAACATGAAGAACCAGATCAATGACAAGGACAAGCTTGCTGAGAAGCTTGAGTCTGATGAGAAGGAGAAGATCGAGACAGCTGTTAAGGATGCACTCGAGTGGCTCGACGACAACCAGAGTGCCGAGAAGGAAGACTATGAAGAGAAGCTGAAGGAGGTCGAGGCCGTCTGCAACCCCATCATCACTGCAGTCTACCAGAGATCCGGTGGTGCTCCTGGTGGCGAATCGGCCGAAGATGACGAGTCTCATGATGAGCTCTGA 1998 47.85 MAGSWRARGSLIVLAILFFGGLFAISIAKEEATKLGTVIGIDLGTTYSCVGVYKNGHVEIIANDQGNRITPSWVAFTDTERLIGEAAKNQAAVNPERTVFDVKRLIGRKFDDKEVQKDMKLVPYKIVNKDGKPYIQVKIKDGETKVFSPEEVSAMILTKMKETAEAFLGKKIKDAVVTVPAYFNDAQRQATKDAGIIAGLNVARIINEPTAAAIAYGLDKKGGEKNILVFDLGGGTFDVSILTIDNGVFEVLATNGDTHLGGEDFDQRIMEYFIKLIKKKHGKDISKDNRALGKLRREAERAKRALSSQHQVRVEIESLFDGTDFSEPLTRARFEELNNDLFRKTMGPVKKAMEDAGLQKNQIDEIVLVGGSTRIPKVQQLLKDYFDGKEPNKGVNPDEAVAYGAAVQGSILSGEGGEETKDILLLDVAPLTLGIETVGGVMTKLIPRNTVIPTKKSQVFTTYQDQQTTVSIQVFEGERSLTKDCRNLGKFDLTGIPPAPRGTPQIEVTFEVDANGILNVKAEDKGTGKSEKITITNDKGRLSQEEIDRMVREAEEFAEEDKKVKERIDARNSLETYVYNMKNQINDKDKLAEKLESDEKEKIETAVKDALEWLDDNQSAEKEDYEEKLKEVEAVCNPIITAVYQRSGGAPGGESAEDDESHDEL 665
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
15 9263256 9266895 - CmoCh15G013530.1 Cmo15g01353 398861
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cmo15g01353 665 ProSitePatterns Heat shock hsp70 proteins family signature 3. 366 380 IPR018181 -
Cmo15g01353 665 Gene3D - 571 665 IPR029048 -
Cmo15g01353 665 PANTHER HEAT SHOCK PROTEIN 70KDA 23 653 IPR013126 GO:0005524|GO:0140662
Cmo15g01353 665 ProSitePatterns Heat shock hsp70 proteins family signature 1. 41 48 IPR018181 -
Cmo15g01353 665 Pfam Hsp70 protein 38 645 IPR013126 GO:0005524|GO:0140662
Cmo15g01353 665 Coils Coil 581 601 - -
Cmo15g01353 665 PRINTS 70kDa heat shock protein signature 37 50 - -
Cmo15g01353 665 PRINTS 70kDa heat shock protein signature 65 77 - -
Cmo15g01353 665 PRINTS 70kDa heat shock protein signature 87 95 - -
Cmo15g01353 665 PRINTS 70kDa heat shock protein signature 175 195 - -
Cmo15g01353 665 PRINTS 70kDa heat shock protein signature 235 245 - -
Cmo15g01353 665 PRINTS 70kDa heat shock protein signature 363 379 - -
Cmo15g01353 665 PRINTS 70kDa heat shock protein signature 395 415 - -
Cmo15g01353 665 PRINTS 70kDa heat shock protein signature 422 441 - -
Cmo15g01353 665 PRINTS 70kDa heat shock protein signature 503 519 - -
Cmo15g01353 665 Gene3D - 221 395 - -
Cmo15g01353 665 Gene3D Actin; Chain A, domain 4 261 344 - -
Cmo15g01353 665 MobiDBLite consensus disorder prediction 644 665 - -
Cmo15g01353 665 PANTHER LUMINAL-BINDING PROTEIN 23 653 - -
Cmo15g01353 665 Gene3D Substrate Binding Domain Of DNAk; Chain A, domain 1 417 570 IPR029047 -
Cmo15g01353 665 Gene3D - 39 410 - -
Cmo15g01353 665 SUPERFAMILY Actin-like ATPase domain 36 220 IPR043129 -
Cmo15g01353 665 Coils Coil 285 305 - -
Cmo15g01353 665 Coils Coil 615 635 - -
Cmo15g01353 665 ProSitePatterns Heat shock hsp70 proteins family signature 2. 229 242 IPR018181 -
Cmo15g01353 665 SUPERFAMILY Heat shock protein 70kD (HSP70), peptide-binding domain 418 575 IPR029047 -
Cmo15g01353 665 Coils Coil 547 567 - -
Cmo15g01353 665 CDD HSPA5-like_NBD 36 410 IPR042050 -
Cmo15g01353 665 SUPERFAMILY Actin-like ATPase domain 223 414 IPR043129 -
Cmo15g01353 665 SUPERFAMILY Heat shock protein 70kD (HSP70), C-terminal subdomain 569 652 IPR029048 -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cmo15g00410 Cmo-Chr15:1867166 Cmo15g01353 Cmo-Chr15:9263256 0 dispersed
Cmo15g00413 Cmo-Chr15:1874588 Cmo15g01353 Cmo-Chr15:9263256 0 dispersed
Cmo15g01353 Cmo-Chr15:9263256 Cmo16g00305 Cmo-Chr16:1399820 0 dispersed
Cmo15g01353 Cmo-Chr15:9263256 Cmo02g00923 Cmo-Chr2:5674154 0 wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cmo15g01353 K09490 - csv:101207505 1283.47