Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cmo15g01361 ATGGCTTGCAATGGAGGAGATTCGTATACGCAATCTTGTGTTTCGACTCAAGGTAGTGGAAGAAATGATCTGTACACGGAGCTATGGAGAGCTTGTGCAGGTCCACTGGTTGATGTACCTCGCGTTGATGAGAGAGTCTTCTATTTCCCTCAGGGGCATATGGAACAATTAGAGGCATCGACGAATCTGGAGCTGAATAAGAGAATTCCTCTGTGTAATCTTTCCTCGAAGATTCTCTGTCGTGTAATTCATATTGAGCTGCTGGCAGATCATGAATCGGATGAGGTTTATGCACAAATAACTTTGATGCCGGAATCAAATCAAAATGAGCCTAACAGTCTAGATCCATGTCCTCCTGAACCAGCTAGACCAGTTGTTCATTCGTTCTGCAAGGTTTTAACTGCTTCTGATACCAGCACTCATGGTGGGTTTTCTGTCCTCCGAAAACATGCTACTGAGTGCCTACCTCCTTTGGACATGACTCAGGCTACCCCAACTCAGGATCTGGTAGCCAAGGATCTTCATGGATACGAGTGGCGATTCAAGCATATTTTCAGAGGTCAGCCACGAAGGCATCTGTTAACAACTGGGTGGAGTACATTTGTTACTTCTAAGAGATTATCTGCTGGGGATTCCTTTGTATTCTTGAGGGGAGACAATGGAGAGTTGCATGTTGGGGTGAGGCGCCGTGCTCGACAGCAGAGCAGCATGCCATCATCTGTGATATCAAGTCAGAGCATGCACCTAGGAGTGCTAGCAACTGCGTCTCATGCTGTTACAACTCAAACCCGCTTTGTAGTCTATTATAAACCTAGGACTTGTCAGTTCATAATAAGTCTGAATAAATACTTGGAAGCAGTCAATAACAAATTTTCTGTTGGCATGAGATTCAACATGAGTTTTGAGGGAGAGGATTCTCCGGAGAGAAGGTTTTCAGGAACTATAATTGGAGCTACAGATATTTCACCTCATTGGCCTAATTCAAGTTGGAGATCACTAAGAGTTCAATGGGATGAACAAACATCTATTCTAAGACCCGACAGGGTATCGCCTTGGGATATAGAACCACTCACGTCTTCAGCAGTCACAGGTCTATCTCAACCGATTTCAAAAAACAAAAGGCCTCGACAATCAACTCCAGCTCATGATGGTGCTGATTTGCCTAAGCCAGCACTTTGGGATTCTGGATTGGCAGAGTCACATGATGGTAAACAGTCCAGTAATGCAGCTGAAAGCAGAAAAGGTGAAAATAATGAATTGTGTCACCACAGAGAGACAGATGCTATCAGCAACAGGACATGTGTATCAAGAACACAGGCTGATGGGACCTGGCTATCTTCTATCCAATCCAATAGTCATAAACACCCAGTAAATGACATGGCCCAGGATTATAAAACTGTCCCTGGCTGTGGTTGGTCTTTTCTGTCAGGACCTTCAACCTCTCATTTGGTTAAGTTAAGTGATGAACAAATACTTGATTCCACTGAAAATGGGAGGAAAGGCGAAACGGTAGCTAGTTGTAGATTGTTTGGTATTGATCTCAATCATTTGGCTAAACTTCCTACTGAGAAAGCATCTTATCAACCAAGCAGCGTGTCTAGTGACACAGATGGGCGCAGCAGTACCTTGTCAGTAGCTCAGTCCGATCCAAAATCTGACAACTTGGAGGTTTCTGTAGAAAGAAAATCAGAACCATTACAAGCATCTCTGAAGGAGACTCAAAGCAATCAAAGTAGCTCAGCTAACACTAGAAGCCGCACCAAGGTTCACATGCATGGGATGGCCGTGGGTAGGGCAGTGGATTTAGCCATCTTAGAAGGCTATGACCAACTAATAGATGAGCTTGAGAAGATGTTTGATGTTAGGGGTCAGCTGTGTGCTCGTGATAAGTGGGAGATTGTATATACCGACGATGAAGGGGATATGATGCTTGTTGGAGACGACCCATGGGAAGAATTTTGTAACATGGTGAGAAGAATTTTTATATGCTCTAGGGAGCAAGTGAAAAAGATGAGCTCAGGAAGCAAGCAGCTGACGTCAATAGAAGTCGAAGGGGCTGCCATAATCCCCGACTCCCCTGCAGTTTGA 2088 44.44 MACNGGDSYTQSCVSTQGSGRNDLYTELWRACAGPLVDVPRVDERVFYFPQGHMEQLEASTNLELNKRIPLCNLSSKILCRVIHIELLADHESDEVYAQITLMPESNQNEPNSLDPCPPEPARPVVHSFCKVLTASDTSTHGGFSVLRKHATECLPPLDMTQATPTQDLVAKDLHGYEWRFKHIFRGQPRRHLLTTGWSTFVTSKRLSAGDSFVFLRGDNGELHVGVRRRARQQSSMPSSVISSQSMHLGVLATASHAVTTQTRFVVYYKPRTCQFIISLNKYLEAVNNKFSVGMRFNMSFEGEDSPERRFSGTIIGATDISPHWPNSSWRSLRVQWDEQTSILRPDRVSPWDIEPLTSSAVTGLSQPISKNKRPRQSTPAHDGADLPKPALWDSGLAESHDGKQSSNAAESRKGENNELCHHRETDAISNRTCVSRTQADGTWLSSIQSNSHKHPVNDMAQDYKTVPGCGWSFLSGPSTSHLVKLSDEQILDSTENGRKGETVASCRLFGIDLNHLAKLPTEKASYQPSSVSSDTDGRSSTLSVAQSDPKSDNLEVSVERKSEPLQASLKETQSNQSSSANTRSRTKVHMHGMAVGRAVDLAILEGYDQLIDELEKMFDVRGQLCARDKWEIVYTDDEGDMMLVGDDPWEEFCNMVRRIFICSREQVKKMSSGSKQLTSIEVEGAAIIPDSPAV 695
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
15 9303666 9310054 - CmoCh15G013610.1 Cmo15g01361 398869
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cmo15g01361 695 Gene3D - 290 363 - -
Cmo15g01361 695 ProSiteProfiles B3 DNA-binding domain profile. 129 231 IPR003340 GO:0003677
Cmo15g01361 695 MobiDBLite consensus disorder prediction 568 587 - -
Cmo15g01361 695 CDD B3_DNA 127 229 IPR003340 GO:0003677
Cmo15g01361 695 ProSiteProfiles PB1 domain profile. 584 665 IPR000270 GO:0005515
Cmo15g01361 695 SMART B3_2 129 231 IPR003340 GO:0003677
Cmo15g01361 695 SUPERFAMILY CAD & PB1 domains 575 660 - -
Cmo15g01361 695 MobiDBLite consensus disorder prediction 363 419 - -
Cmo15g01361 695 Pfam AUX/IAA family 571 662 IPR033389 -
Cmo15g01361 695 Gene3D - 579 672 - -
Cmo15g01361 695 Pfam B3 DNA binding domain 129 230 IPR003340 GO:0003677
Cmo15g01361 695 PANTHER AUXIN RESPONSE FACTOR 4-RELATED 19 682 IPR044835 GO:0003677|GO:0006355|GO:0009725
Cmo15g01361 695 SUPERFAMILY DNA-binding pseudobarrel domain 120 258 IPR015300 -
Cmo15g01361 695 Pfam Auxin response factor 255 333 IPR010525 GO:0003677|GO:0005634|GO:0006355|GO:0009725
Cmo15g01361 695 Gene3D - 126 231 IPR015300 -
Cmo15g01361 695 MobiDBLite consensus disorder prediction 400 414 - -
Cmo15g01361 695 MobiDBLite consensus disorder prediction 524 553 - -
Cmo15g01361 695 PANTHER AUXIN RESPONSE FACTOR 9 19 682 - -
Cmo15g01361 695 MobiDBLite consensus disorder prediction 524 590 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cmo04g00721 Cmo-Chr4:3582996 Cmo15g01361 Cmo-Chr15:9303666 0 dispersed
Cmo06g00003 Cmo-Chr6:8714 Cmo15g01361 Cmo-Chr15:9303666 7.17E-68 dispersed
Cmo10g00015 Cmo-Chr10:102271 Cmo15g01361 Cmo-Chr15:9303666 6.31E-31 dispersed
Cmo15g01361 Cmo-Chr15:9303666 Cmo03g01425 Cmo-Chr3:10309688 1.97E-15 dispersed
Cmo15g01361 Cmo-Chr15:9303666 Cmo16g00585 Cmo-Chr16:2822610 0 wgd
Cmo15g01361 Cmo-Chr15:9303666 Cmo02g00930 Cmo-Chr2:5703867 0 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
11221 PF02309 AUX_IAA 5.30E-07 CL0072 Cmo TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cmo15g01361 K14486 - csv:101209208 1244.95