Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cmo15g01373 ATGGATACTTCTCAATGGCCACAGGAGATTTTGATGAAACCCATTCAAGAAATTGTGGCAAACACTTACCCAAAACAAGGAGTTTCAAGTTTAGAGAGAAAAATTAGACCCCAAAAGGAACAAGCTTTGAATTGTCCAAGGTGTAATTCGAGCAATACAAAGTTTTGTTATTACAATAATTATAGCCTCACACAACCAAGATACTTTTGCAAGACATGTAGAAGGTATTGGACTGAAGGTGGTTCCTTAAGAAACATTCCTGTTGGAGGTGGCTCAAGGAAGAACAAGAGACCTTCTTCACAAAAGAAAGTTCTTGATCTCCCACAAAACCCTAATTCCGCCTCTTCCGAGACCGTTGTCGTCGGTCGTAACCCTTCGACGATTGATGTCACGACGAATCACCTCTCGGCGATGGAGCTTCTCACCGGGATGACGAGCAAGAACTCTAGAGACTTTAATTGTTTTCTTCCAATGCCTTCCATCGTCCCTGATCCTCGCTCCGTTTACACGACCGGGTTTCCCGATCTCCACGAGCCATTTAAACCAAGCCTTGGATTCTCTCTTGATGGGTATGGAGTCATCCCGACCGAGGTCGGCAATGGGGAAGGGAGGGCGATGCAGCTGCCATTGTTTGAAGATTTGAAGCAAGGAGAGTCTAATGGAGTTGAGCAAGGCAAAGAACAAGGAGATTCAAATGGGTATTGGAGTGGGATGTTGAGTGGAGCATCATGGTAA 735 45.03 MDTSQWPQEILMKPIQEIVANTYPKQGVSSLERKIRPQKEQALNCPRCNSSNTKFCYYNNYSLTQPRYFCKTCRRYWTEGGSLRNIPVGGGSRKNKRPSSQKKVLDLPQNPNSASSETVVVGRNPSTIDVTTNHLSAMELLTGMTSKNSRDFNCFLPMPSIVPDPRSVYTTGFPDLHEPFKPSLGFSLDGYGVIPTEVGNGEGRAMQLPLFEDLKQGESNGVEQGKEQGDSNGYWSGMLSGASW 244
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
15 9357157 9358632 + CmoCh15G013730.1 Cmo15g01373 398881
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cmo15g01373 244 Pfam Dof domain, zinc finger 41 97 IPR003851 GO:0003677|GO:0006355
Cmo15g01373 244 MobiDBLite consensus disorder prediction 220 244 - -
Cmo15g01373 244 PANTHER DOF ZINC FINGER PROTEIN DOF4.6-LIKE 109 241 - -
Cmo15g01373 244 PANTHER DOF ZINC FINGER PROTEIN DOF4.6-LIKE 1 103 - -
Cmo15g01373 244 MobiDBLite consensus disorder prediction 102 118 - -
Cmo15g01373 244 ProSiteProfiles Zinc finger Dof-type profile. 43 97 IPR003851 GO:0003677|GO:0006355
Cmo15g01373 244 MobiDBLite consensus disorder prediction 221 244 - -
Cmo15g01373 244 PANTHER DOF ZINC FINGER PROTEIN DOF1.4-RELATED 1 103 IPR045174 GO:0003700|GO:0006355
Cmo15g01373 244 PANTHER DOF ZINC FINGER PROTEIN DOF1.4-RELATED 109 241 IPR045174 GO:0003700|GO:0006355
Cmo15g01373 244 MobiDBLite consensus disorder prediction 87 118 - -
Cmo15g01373 244 ProSitePatterns Zinc finger Dof-type signature. 45 81 IPR003851 GO:0003677|GO:0006355
       

Event-related genes

Select Gene_1 Gene_2 Event_name
Cmo02g00942 Cmo15g01373 CST
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cmo02g01163 Cmo-Chr2:7022547 Cmo15g01373 Cmo-Chr15:9357157 1.02E-40 dispersed
Cmo08g00139 Cmo-Chr8:777780 Cmo15g01373 Cmo-Chr15:9357157 6.19E-38 dispersed
Cmo13g00918 Cmo-Chr13:8117156 Cmo15g01373 Cmo-Chr15:9357157 3.07E-37 dispersed
Cmo14g02181 Cmo-Chr14:15617914 Cmo15g01373 Cmo-Chr15:9357157 3.85E-36 dispersed
Cmo15g00623 Cmo-Chr15:3031749 Cmo15g01373 Cmo-Chr15:9357157 1.16E-35 dispersed
Cmo15g01079 Cmo-Chr15:7134402 Cmo15g01373 Cmo-Chr15:9357157 8.83E-51 dispersed
Cmo15g01373 Cmo-Chr15:9357157 Cmo16g00040 Cmo-Chr16:176924 7.09E-37 dispersed
Cmo15g01373 Cmo-Chr15:9357157 Cmo02g00942 Cmo-Chr2:5770498 6.98E-121 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
11223 PF02701 zf-Dof 3.60E-33 No_clan Cmo TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cmo15g01373 - - cmax:111469087 494.967