Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cmo15g01373 ATGGATACTTCTCAATGGCCACAGGAGATTTTGATGAAACCCATTCAAGAAATTGTGGCAAACACTTACCCAAAACAAGGAGTTTCAAGTTTAGAGAGAAAAATTAGACCCCAAAAGGAACAAGCTTTGAATTGTCCAAGGTGTAATTCGAGCAATACAAAGTTTTGTTATTACAATAATTATAGCCTCACACAACCAAGATACTTTTGCAAGACATGTAGAAGGTATTGGACTGAAGGTGGTTCCTTAAGAAACATTCCTGTTGGAGGTGGCTCAAGGAAGAACAAGAGACCTTCTTCACAAAAGAAAGTTCTTGATCTCCCACAAAACCCTAATTCCGCCTCTTCCGAGACCGTTGTCGTCGGTCGTAACCCTTCGACGATTGATGTCACGACGAATCACCTCTCGGCGATGGAGCTTCTCACCGGGATGACGAGCAAGAACTCTAGAGACTTTAATTGTTTTCTTCCAATGCCTTCCATCGTCCCTGATCCTCGCTCCGTTTACACGACCGGGTTTCCCGATCTCCACGAGCCATTTAAACCAAGCCTTGGATTCTCTCTTGATGGGTATGGAGTCATCCCGACCGAGGTCGGCAATGGGGAAGGGAGGGCGATGCAGCTGCCATTGTTTGAAGATTTGAAGCAAGGAGAGTCTAATGGAGTTGAGCAAGGCAAAGAACAAGGAGATTCAAATGGGTATTGGAGTGGGATGTTGAGTGGAGCATCATGGTAA 735 45.03 MDTSQWPQEILMKPIQEIVANTYPKQGVSSLERKIRPQKEQALNCPRCNSSNTKFCYYNNYSLTQPRYFCKTCRRYWTEGGSLRNIPVGGGSRKNKRPSSQKKVLDLPQNPNSASSETVVVGRNPSTIDVTTNHLSAMELLTGMTSKNSRDFNCFLPMPSIVPDPRSVYTTGFPDLHEPFKPSLGFSLDGYGVIPTEVGNGEGRAMQLPLFEDLKQGESNGVEQGKEQGDSNGYWSGMLSGASW 244
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
15 9357157 9358632 + CmoCh15G013730.1 Cmo15g01373 398881

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cmo15g01373 244 Pfam Dof domain, zinc finger 41 97 IPR003851 GO:0003677|GO:0006355
Cmo15g01373 244 MobiDBLite consensus disorder prediction 220 244 - -
Cmo15g01373 244 PANTHER DOF ZINC FINGER PROTEIN DOF4.6-LIKE 109 241 - -
Cmo15g01373 244 PANTHER DOF ZINC FINGER PROTEIN DOF4.6-LIKE 1 103 - -
Cmo15g01373 244 MobiDBLite consensus disorder prediction 102 118 - -
Cmo15g01373 244 ProSiteProfiles Zinc finger Dof-type profile. 43 97 IPR003851 GO:0003677|GO:0006355
Cmo15g01373 244 MobiDBLite consensus disorder prediction 221 244 - -
Cmo15g01373 244 PANTHER DOF ZINC FINGER PROTEIN DOF1.4-RELATED 1 103 IPR045174 GO:0003700|GO:0006355
Cmo15g01373 244 PANTHER DOF ZINC FINGER PROTEIN DOF1.4-RELATED 109 241 IPR045174 GO:0003700|GO:0006355
Cmo15g01373 244 MobiDBLite consensus disorder prediction 87 118 - -
Cmo15g01373 244 ProSitePatterns Zinc finger Dof-type signature. 45 81 IPR003851 GO:0003677|GO:0006355
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cmo15g01373 - - - cmax:111469087 494.967
       

WGDs- Genes

Select Gene_1 Gene_2 Event_name
Cmo02g00942 Cmo15g01373 CST
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cmo02g01163 Cmo-Chr2:7022547 Cmo15g01373 Cmo-Chr15:9357157 1.02E-40 dispersed
Cmo08g00139 Cmo-Chr8:777780 Cmo15g01373 Cmo-Chr15:9357157 6.19E-38 dispersed
Cmo13g00918 Cmo-Chr13:8117156 Cmo15g01373 Cmo-Chr15:9357157 3.07E-37 dispersed
Cmo14g02181 Cmo-Chr14:15617914 Cmo15g01373 Cmo-Chr15:9357157 3.85E-36 dispersed
Cmo15g00623 Cmo-Chr15:3031749 Cmo15g01373 Cmo-Chr15:9357157 1.16E-35 dispersed
Cmo15g01079 Cmo-Chr15:7134402 Cmo15g01373 Cmo-Chr15:9357157 8.83E-51 dispersed
Cmo15g01373 Cmo-Chr15:9357157 Cmo16g00040 Cmo-Chr16:176924 7.09E-37 dispersed
Cmo15g01373 Cmo-Chr15:9357157 Cmo02g00942 Cmo-Chr2:5770498 6.98E-121 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi2g209 . . . . . . . . . . Cma02g00866 Cma15g01306 Car02g00682 Car15g01176 . . . . . . . . . . . . . . . . . . . . . . Csa05g00030 Chy09g01317 . . . Bda07g01944 . . . . . . Cmo02g00942 Cmo15g01373 . . . . . . Bhi12g00102 . . Lac11g1945 Hepe06g1450 . Lcy12g1540 Cla01g00159 Cam01g0165 Cec01g0162 Cco01g0166 Clacu01g0161 Cmu01g0160 Cre09g2346 Lsi09g00151 . . Cme09g01866
       

Syn-Families

Select Gene Event_type S_start S_end Function Ath_gene Identity(%) E-value Score
Cmo13g00632 CCT,CST 16 169 C2C2-Dof Transcription Factor Family AT1G29160 57.2 6.3e-45 177.9
Cmo18g00391 CCT,CST 11 155 C2C2-Dof Transcription Factor Family AT1G29160 52.9 3.2e-41 165.6
Cmo03g01322 CCT,CST 11 161 C2C2-Dof Transcription Factor Family AT1G29160 52.4 4.6e-40 161.8
Cmo07g00184 CCT,CST 11 162 C2C2-Dof Transcription Factor Family AT1G29160 53.8 4.6e-40 161.8
Cmo15g01373 CST 1 96 C2C2-Dof Transcription Factor Family AT1G64620 72.5 2.7e-39 160.2
Cmo13g00632 CCT,CST 16 169 C2C2-Dof Transcription Factor Family AT2G34140 56.2 6.1e-45 177.9
Cmo18g00391 CCT,CST 11 155 C2C2-Dof Transcription Factor Family AT2G34140 52.4 1.4e-41 166.8
Cmo03g01322 CCT,CST 11 161 C2C2-Dof Transcription Factor Family AT2G34140 51.8 5.5e-38 154.8
Cmo07g00184 CCT,CST 11 162 C2C2-Dof Transcription Factor Family AT2G34140 50.9 2.7e-37 152.5
Cmo04g02761 . 1 133 C2C2-Dof Transcription Factor Family AT2G37590 65.2 5.1e-40 162.5
Cmo14g00147 CCT,CST,ECH 1 132 C2C2-Dof Transcription Factor Family AT2G37590 64.5 2.2e-38 157.1
Cmo06g00304 CCT,CST,ECH 1 127 C2C2-Dof Transcription Factor Family AT2G37590 64.8 4.8e-38 156.0
Cmo01g00618 . 1 129 C2C2-Dof Transcription Factor Family AT2G37590 58.0 4.1e-37 152.9
Cmo13g00132 CCT,ECH 30 104 C2C2-Dof Transcription Factor Family AT2G37590 89.3 2.0e-36 150.6
Cmo15g01373 CST 1 94 C2C2-Dof Transcription Factor Family AT4G24060 73.1 1.5e-39 161.0
Cmo01g00618 . 1 129 C2C2-Dof Transcription Factor Family AT5G02460 57.6 6.2e-40 162.5
Cmo13g00132 CCT,ECH 23 104 C2C2-Dof Transcription Factor Family AT5G02460 86.6 4.4e-38 156.4
Cmo15g00409 . 1 125 C2C2-Dof Transcription Factor Family AT5G02460 57.8 1.3e-37 154.8
Cmo03g00443 CCT,ECH 43 116 C2C2-Dof Transcription Factor Family AT5G02460 86.5 2.4e-36 150.6
Cmo03g00443 CCT,ECH 19 138 C2C2-Dof Transcription Factor Family AT3G55370 62.8 5.9e-37 152.5
Cmo13g00132 CCT,ECH 19 157 C2C2-Dof Transcription Factor Family AT3G55370 51.6 2.2e-36 150.6
Cmo11g00231 CCT,CST 26 311 C2C2-Dof Transcription Factor Family AT5G60850 53.2 3.9e-50 196.1
Cmo10g00299 CCT,CST 26 320 C2C2-Dof Transcription Factor Family AT5G60850 54.0 1.1e-47 188.0
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0000183 6 5 2 3 4 8 10 7 8 6 7 7 6 7 8 9 7 3 5 7 7 7 6 11 6 8 5 8 5 3 191
       

Regulatory proteins

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
11223 PF02701 zf-Dof 3.60E-33 No_clan Cmo TF
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Cmo15g01373 Cmo_Chr15 FPKM 3.151427 3.801555 10.996795 13.074926 38.947857 33.077587 38.857414 18.990492 20.203989 19.428043