Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cmo15g01375 ATGTCCTTGCCGGATATGGTTGATGTTGCTGATAAATTAGCCTATTTCCAAGCGATTACAGGCTTAGAAGATCCCGAAATCTGCACTGAAATCCTTGCTGCTCACGGTTGGGACCTTGAACGGGCTGTTTCTTCTTTTACTTCTACCAATTCGGAATCCTCTGCTTCCGCCGCCGTCGATGGTGGTGGTGGTGGCGGCGACGATCATTTTGACCCTGCGACGCGCCAAATCCTCGACAGACTGGAACAGCAAGAAAATGCCGCTCCGGCCCCGAGTTTGGCTTGGAAAATCGTTACACTTCCGATTTCTGTGATTTCTGGTAGTTTAGGGCTTGTTTCGGGTGCTGTTGGTTTGGGATTATGGGCTGCTGGTGGTATTCTTTCGTATTCTCTTGGAGTGATCGGGTTAGGGTCTGGTTCTGGCCAGAACGCTGAGTCGTCGGCTCGGTTGGTTTCTGTGTCTGCTGCAGCATCGGAGGCTATTGATTTTGTGTCGGCGTTTGAGAGGGATTATGGGACAACTAGGCCAAATTTTGTGGGGGAAGGGTTCATGGACGCGTTGCAGCGTTCGAGAAATGCGTTTAAGCTCTTGTTTGTTTACCTTCACTCTCCTGATCATCCGGATACGCCATTGTTCTGCGGCAGGACCTTGTGTTCGGAGACTATTGCAGCGTTTGTGAATGAGAATTTTGTTTCGTGGGGAGGGAGTATTCGCGCTAGTGAAGGTTTTAAGATGAGTAATAGCTTGAAAGCATCGAGATACCCATTTTGTGCCGTGGTTATGGCAGCTACAAATCAAAGGATCGCATTGCTTCAGCAGGTCGAGGGACCAAAAACTGCTGAAGAAATGCTAGTGATTCTACAGAGAGTTCTTGAAGAAAGTTCTCCTGTTCTGGTTTCAGCAAGGCTTGATGCAGAAGAAAGAAGAAATAACGTGCGATTAAGGGAGGAACAAGATGCTGCTTACAGAGCGGCCCTTGAAGCAGATCAAGCCAGGGAACGACAAAGGAGAGAGGAGCAAGAGCGTCTGGAAAGAGAAGCCGCTGAAGCTGAGAGGAAGAGGAAAGAGGAAGAAGAAGCTCGTGAGAGAGCTGCTCGTGAAGCTGCAGAAAGAGAGGCTGCTTTAGCCAGAATGCGGCAGGAGAAAGCAATGTCACTTGGTGCTGAACCTGACAAAGGACCTAATGTTACACAAGTGTTGGTGCGGTTCCCTACTGGAGAACGCAAGGAAAGGAGGTTCCACAGTAGCGCATCGATCCAAACTCTCTACGACTATGTCGATTCCTTGGGTTGTTTGGAGGCTGATGGTTATAATCTGGTTTCAAACTTCCCTCGAGTTGTTTATGGCACTGAGAAGCTCTCCTTATCCTTGAAAGAAGCTGGACTGCACCCTCAGGCCAGTCTTTTTGTGGAGCTAACCTCGTAA 1425 48.91 MSLPDMVDVADKLAYFQAITGLEDPEICTEILAAHGWDLERAVSSFTSTNSESSASAAVDGGGGGGDDHFDPATRQILDRLEQQENAAPAPSLAWKIVTLPISVISGSLGLVSGAVGLGLWAAGGILSYSLGVIGLGSGSGQNAESSARLVSVSAAASEAIDFVSAFERDYGTTRPNFVGEGFMDALQRSRNAFKLLFVYLHSPDHPDTPLFCGRTLCSETIAAFVNENFVSWGGSIRASEGFKMSNSLKASRYPFCAVVMAATNQRIALLQQVEGPKTAEEMLVILQRVLEESSPVLVSARLDAEERRNNVRLREEQDAAYRAALEADQARERQRREEQERLEREAAEAERKRKEEEEARERAAREAAEREAALARMRQEKAMSLGAEPDKGPNVTQVLVRFPTGERKERRFHSSASIQTLYDYVDSLGCLEADGYNLVSNFPRVVYGTEKLSLSLKEAGLHPQASLFVELTS 474
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
15 9365759 9371993 + CmoCh15G013750.1 Cmo15g01375 398883

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cmo15g01375 474 SMART 45neu3 162 288 IPR006577 -
Cmo15g01375 474 PANTHER FAS-ASSOCIATED PROTEIN 6 474 - -
Cmo15g01375 474 Pfam UBX domain 393 471 IPR001012 GO:0005515
Cmo15g01375 474 Coils Coil 323 381 - -
Cmo15g01375 474 Gene3D - 7 57 - -
Cmo15g01375 474 CDD UBX 399 471 - -
Cmo15g01375 474 Gene3D - 395 473 - -
Cmo15g01375 474 MobiDBLite consensus disorder prediction 328 375 - -
Cmo15g01375 474 Gene3D Glutaredoxin 146 298 - -
Cmo15g01375 474 SUPERFAMILY Ubiquitin-like 355 471 IPR029071 -
Cmo15g01375 474 ProSiteProfiles UBX domain profile. 392 470 IPR001012 GO:0005515
Cmo15g01375 474 SMART ubx_3 390 472 IPR001012 GO:0005515
Cmo15g01375 474 Pfam UBA-like domain 11 51 - -
Cmo15g01375 474 CDD UAS 178 293 - -
Cmo15g01375 474 CDD UBA_FAF 16 47 - -
Cmo15g01375 474 MobiDBLite consensus disorder prediction 52 72 - -
Cmo15g01375 474 PANTHER PLANT UBX DOMAIN-CONTAINING PROTEIN 10-LIKE 6 474 - -
Cmo15g01375 474 SUPERFAMILY Thioredoxin-like 157 302 IPR036249 -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cmo15g01375 K18726 FAF2, UBXD8; FAS-associated factor 2 - csv:101203982 669.463
       

WGDs- Genes

Select Gene_1 Gene_2 Event_name
Cmo02g00943 Cmo15g01375 CST
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cmo15g01375 Cmo-Chr15:9365759 Cmo16g01046 Cmo-Chr16:7318961 1.78E-17 dispersed
Cmo13g00906 Cmo-Chr13:8053079 Cmo15g01375 Cmo-Chr15:9365759 2.13E-68 transposed
Cmo15g01375 Cmo-Chr15:9365759 Cmo02g00943 Cmo-Chr2:5773750 1.15E-164 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi2g218 . . . . . . Bma07g00995 . . . Cma02g00934 Cma15g01308 Car02g00683 Car15g01178 . . Cpe05g00779 . . . . . . . . . . . . . . . Cone12ag0544 . . . Csa05g00177 Chy09g01319 . Blo03g00816 . . Bda09g00683 Bpe08g00875 . . . . Cmo02g00943 Cmo15g01375 . . . . . . Bhi12g00100 . . Lac11g1941 Hepe06g1448 . Lcy12g1536 Cla01g00157 Cam01g0162 Cec01g0159 Cco01g0164 Clacu01g0158 Cmu01g0157 Cre09g2349 Lsi09g00149 . . Cme09g01868
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0006818 2 1 2 1 1 1 2 1 1 1 1 1 2 1 1 2 1 2 1 1 1 1 1 1 1 1 1 2 1 1 37
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Cmo15g01375 Cmo_Chr15 FPKM 1.390078 2.262753 24.261637 22.547192 86.108253 86.967995 83.212143 6.300962 6.179103 4.914549