Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cmo15g01376 ATGAGTTGCGGTTCGGATTTGATGTCTGGGAACTCCGAGGCTGATGATCGTGAGATTGTAGAGAAGGATCCAACAGGACGATACATTCGGTACGATGAGATTTTGGGTAAAGGGGCATTCAAGACAGTATACAGAGCATTCGACGAAGTCGGTGGAATCGAAGTTGCTTGGAGCCAAGTTGACATTGAAGATGTTTTGCAGTCACCAGAACAGCTTCAGAGATTATATTCTGAGGTTCATCTGCTGAAGTCTCTGAAACATGAAAATATAATCAAATTCTATTGCTATTGGGTTGATGATAAGAACAAGACTATCAACATGATTACAGAATTGTTCACTTCTGGGAGTTTGAGGCAATATCGAAGGAAGCATAGGAAAGTTGACTTGAAAGCCTTCAAGAATTGGGCGAGGCAGATACTGCGAGGCTTGACGTATTTACATGGTCACAACCCTCCAATTATTCATAGGGATTTGAAATGTGATAATATATTTGTCAATGGAAATACGGGAGATGTTAAAATTGGAGATCTCGGTTTGGCGATTGTCATGCAGCAGCCTACTGCTCGAAGTGTTATTGGCACTCCAGAGTTCATGGCTCCAGAACTTTATGATGAGGAGTATAATGAGCTTGTTGATATCTATTCTTTTGGCATGTGCATGTTGGAAATTGTGACTTGTGAATACCCATATAGTGAGTGCAAAAATTCTGCCCAAATATTCAAGAAGGTTACTTCGGGTATAAAGCCTGCTTCCCTCGAAAAAGTGCTGGATCCCCAAGTTAAGCAGTTCATAGAGAAGTGTCTGGTTCCAGCATCCATGAGACTACCTGCAAGTGAACTCTTGAAAGATCCCTTCCTTGCAACTGAAAGTCCCAAGGAGCATAGTTTTGAACCTTTAAGGTTATCGAATGAGCCGTTCAAATCTGAAAATCCTCCTGTGCTAGCTTCTCATTCAATGGACACAGACCATAACTGCAGCAAATTCTCAGGCTCAGTGGTCTCATCTGTCAAAAGCGATAACGACATTTCTCAGTTTTCAACTCTCGAACTTCAGAGGCTCACCGAGACTAATGAATTGACGCTAAAAGGGGACATGACTGATCATAATACAATTTCGTTCCATTTGCGCATTGCTGAACTAAGCGGTAAATCGAAGAATATCCATTTTGCCTTCTATCTCGACTCTGATACTTCATTGGCTATTGTTTTGGAGATGGTTGAACAACTCGAACTGTCAAATGAAGACGCGACTGTCATAGCGAAATTAATCGATGAATTAATTGCCAAGTTTGTTCCCGACTCGAAACCATGTCCAAACTATTATCACGGACAAAACACTACACACAGTTCTTCTGAAAGTGAAACTCAAGAGGACAAGACCTTCATTCCTCCTTTCTTCTCTGAGATGGTACTATCATCTCCCATGGTGGCTGGTGCAGGGAACAACCCGACGCATTTCACCAAGGTGGAAGATCAAGAAAACCTACAGTCGATCATTTCGTGTGCATCGCTCGACTTCAATCACTCAACTATCTCAGATTACAGCACAGGAAAAGGAACAATGGATTTCGATGCTGTTGGATCTATTTCGACGATGATCGATTTCGCAAACCCATCTCTAATCTCCTCCTGCTCAGGAATGTCGAAAGAAATGAGTTCGTCGAACTTTTCGAGCCTTTCTCTGGAAGAAAGAGATCACCAAGATGAACTGAAGATGGAGATTGATGCCATTGACTTACAGTACCATCAGTGCCTTTGTGAACTGTCAAGAATGAGAGAGGAAGCAATAGAAAGTGCGAAGAAGAGGTGGATGTCAAAGAAGAAAGCTCCTGCTTTTTGA 1839 42.09 MSCGSDLMSGNSEADDREIVEKDPTGRYIRYDEILGKGAFKTVYRAFDEVGGIEVAWSQVDIEDVLQSPEQLQRLYSEVHLLKSLKHENIIKFYCYWVDDKNKTINMITELFTSGSLRQYRRKHRKVDLKAFKNWARQILRGLTYLHGHNPPIIHRDLKCDNIFVNGNTGDVKIGDLGLAIVMQQPTARSVIGTPEFMAPELYDEEYNELVDIYSFGMCMLEIVTCEYPYSECKNSAQIFKKVTSGIKPASLEKVLDPQVKQFIEKCLVPASMRLPASELLKDPFLATESPKEHSFEPLRLSNEPFKSENPPVLASHSMDTDHNCSKFSGSVVSSVKSDNDISQFSTLELQRLTETNELTLKGDMTDHNTISFHLRIAELSGKSKNIHFAFYLDSDTSLAIVLEMVEQLELSNEDATVIAKLIDELIAKFVPDSKPCPNYYHGQNTTHSSSESETQEDKTFIPPFFSEMVLSSPMVAGAGNNPTHFTKVEDQENLQSIISCASLDFNHSTISDYSTGKGTMDFDAVGSISTMIDFANPSLISSCSGMSKEMSSSNFSSLSLEERDHQDELKMEIDAIDLQYHQCLCELSRMREEAIESAKKRWMSKKKAPAF 612
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
15 9374276 9378361 + CmoCh15G013760.1 Cmo15g01376 398884
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cmo15g01376 612 Gene3D Phosphorylase Kinase; domain 1 12 110 - -
Cmo15g01376 612 PANTHER WNK KINASE 11 607 - -
Cmo15g01376 612 Gene3D - 369 463 - -
Cmo15g01376 612 SUPERFAMILY Protein kinase-like (PK-like) 30 337 IPR011009 -
Cmo15g01376 612 PANTHER SERINE/THREONINE-PROTEIN KINASE WNK WITH NO LYSINE -RELATED 11 607 - -
Cmo15g01376 612 Pfam Protein kinase domain 32 286 IPR000719 GO:0004672|GO:0005524|GO:0006468
Cmo15g01376 612 Gene3D Transferase(Phosphotransferase) domain 1 112 292 - -
Cmo15g01376 612 ProSiteProfiles Protein kinase domain profile. 29 286 IPR000719 GO:0004672|GO:0005524|GO:0006468
Cmo15g01376 612 SMART serkin_6 29 286 IPR000719 GO:0004672|GO:0005524|GO:0006468
Cmo15g01376 612 CDD STKc_WNK 27 286 - -
Cmo15g01376 612 ProSitePatterns Serine/Threonine protein kinases active-site signature. 153 165 IPR008271 GO:0004672|GO:0006468
       

Event-related genes

Select Gene_1 Gene_2 Event_name
Cmo02g00946 Cmo15g01376 CST
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cmo15g01376 Cmo-Chr15:9374276 Cmo18g00155 Cmo-Chr18:1078095 1.05E-154 dispersed
Cmo14g02185 Cmo-Chr14:15627030 Cmo15g01376 Cmo-Chr15:9374276 0 transposed
Cmo15g01376 Cmo-Chr15:9374276 Cmo02g00946 Cmo-Chr2:5781968 0 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
74932 PF00069 Pkinase 2.50E-50 CL0016 Cmo PK
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cmo15g01376 K08867 - csv:101207748 1006.13