Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cmo15g01385 ATGGAGGTGGTTTCTCCGATCAACGGCTGCTCCGGCGACACCGCTGGAAGAGTCATCATCTGCAAAGCCGCCGTGGCTTGGGGTCCGGGGGAGCCGCTCGTCATCGAACAAGTCCGGGTCGACCCGCCACAGAAAATGGAGGTCCGAGTCAAAATCCTCTTCACTTCCATTTGTCACACGGATCTCAGCGCTTGGAAAGGAGAGAATGAATCCCAAAGGGCTTACCCTCGTATATTCGGCCATGAAGCTGCCGGAATTGTGGAGAGTGTGGGGGAGGGCGTGACGGAGGTGGCGGCCGGAGATCACGTGATTCCGCTATTCCACGGAGAGTGTGGCACGTGCCGGTGTTGCAAGAACCCGAAAACGAACGCTTGCGAGGTGATGGGTGTGAATCCGATGAAAAGAACGATGACCCACGACGGGAAAACCCGGTTCACGACGGCGGACGAGCGGCGGCTGCCGATTTTTCACTTCCTAAATACGTCAACTTTCAGCGAGTTCACGGTGTTGGAATCGGCCTGTGTCGTTAAAATTGACTCGGAAGCTCCCATGAAGAAGATGACCTTGCTAAGCTGTGGCCTTTCTACTGGAGTGGGAGCGGCATGGAATACGGTGAACGTGGAAGCTGGCTCGACGGTGGCGATTTTTGGACTGGGAGCAGTAGGACTTGCTGTGGCTGAAGGAGCACGAGCCCGTGGTGCTTCTAAAATCATCGGCGTCGATATCAACCCACTCAAGTCTATAGTTGGGAAGCAGTTCGGAATCACCGACTTTATAAATCCCAGAGACTCCAACAACCCCGTTCATGAGATAATTGTAGAAAAAACGAACGGAGGTGTGGATTACAGCTTTGAATGTGTCGGAAATGGAGAGATTTTGCGCTCGGCCTTCTTGTCTACTCACATTGGATGGGGAACGACGGTGATGTTGGGAGTTCATACGAGCCCGAAAATGCTACCACTTCATCCCATGGAGCTGTTCAGTGGGCGTAAGGTGGTGGCTTCCGTTTTTGGAGGGTTCAAAGGCAGGACTCACATGCCTCAGTTTGCTAAGCAATGCATCAAAGGGGTAATTCAAGAACTCTCCTCTCTTTGCCTTGACACAATGATACTAACTTCTTCACCTTTCTATCAGGTGGTCAAATTGGATGAATTCATAACGCATCAACTTCCCTTTCACGAGATAAACGACGCGTTTCAGCTACTTATCGACGGAAAATCTCTAAGATGTGTTTTGCAATTTTAA 1245 51.24 MEVVSPINGCSGDTAGRVIICKAAVAWGPGEPLVIEQVRVDPPQKMEVRVKILFTSICHTDLSAWKGENESQRAYPRIFGHEAAGIVESVGEGVTEVAAGDHVIPLFHGECGTCRCCKNPKTNACEVMGVNPMKRTMTHDGKTRFTTADERRLPIFHFLNTSTFSEFTVLESACVVKIDSEAPMKKMTLLSCGLSTGVGAAWNTVNVEAGSTVAIFGLGAVGLAVAEGARARGASKIIGVDINPLKSIVGKQFGITDFINPRDSNNPVHEIIVEKTNGGVDYSFECVGNGEILRSAFLSTHIGWGTTVMLGVHTSPKMLPLHPMELFSGRKVVASVFGGFKGRTHMPQFAKQCIKGVIQELSSLCLDTMILTSSPFYQVVKLDEFITHQLPFHEINDAFQLLIDGKSLRCVLQF 414
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
15 9428590 9432898 + CmoCh15G013850.1 Cmo15g01385 398893

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cmo15g01385 414 PANTHER ALCOHOL DEHYDROGENASE-LIKE 3 14 359 - -
Cmo15g01385 414 Pfam Zinc-binding dehydrogenase 220 339 IPR013149 -
Cmo15g01385 414 PANTHER ALCOHOL DEHYDROGENASE 377 413 - -
Cmo15g01385 414 PANTHER ALCOHOL DEHYDROGENASE 14 359 - -
Cmo15g01385 414 Pfam Alcohol dehydrogenase GroES-like domain 47 134 IPR013154 -
Cmo15g01385 414 PANTHER ALCOHOL DEHYDROGENASE-LIKE 3 377 413 - -
Cmo15g01385 414 SUPERFAMILY GroES-like 371 414 IPR011032 -
Cmo15g01385 414 SUPERFAMILY GroES-like 14 202 IPR011032 -
Cmo15g01385 414 Gene3D - 197 335 - -
Cmo15g01385 414 ProSitePatterns Zinc-containing alcohol dehydrogenases signature. 80 94 IPR002328 GO:0008270|GO:0016491
Cmo15g01385 414 SUPERFAMILY NAD(P)-binding Rossmann-fold domains 183 356 IPR036291 -
Cmo15g01385 414 Gene3D - 24 358 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cmo15g01385 K00001 E1.1.1.1, adh; alcohol dehydrogenase [EC:1.1.1.1] - csv:101210776 661.373
       

WGDs- Genes

Select Gene_1 Gene_2 Event_name
Cmo02g00954 Cmo15g01385 CST
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cmo09g01096 Cmo-Chr9:6085628 Cmo15g01385 Cmo-Chr15:9428590 3.09E-130 dispersed
Cmo13g00970 Cmo-Chr13:8362214 Cmo15g01385 Cmo-Chr15:9428590 2.71E-133 dispersed
Cmo15g01385 Cmo-Chr15:9428590 Cmo05g01018 Cmo-Chr5:8197154 4.95E-110 dispersed
Cmo15g01385 Cmo-Chr15:9428590 Cmo02g00954 Cmo-Chr2:5842345 0 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi2g254 . . . . Bpe05g00386 . Bma07g01033 . . . Cma02g00945 Cma15g01322 Car02g00694 Car15g01187 . . Cpe05g00768 . . . . . . . . . . . . . . . Cone12ag0581 . . . Csa05g00159 Chy09g01339 . . . . Bda09g00635 Bpe08g00906 . Bma05g00537 . . Cmo02g00954 Cmo15g01385 . . . . . . Bhi12g00080 . . Lac11g1903 Hepe06g1432 . Lcy12g1511 Cla01g00141 Cam01g0146 Cec01g0142 Cco01g0147 Clacu01g0141 Cmu01g0141 Cre09g2365 Lsi09g00132 . . Cme09g01886
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0008094 1 1 1 2 2 1 2 0 0 1 1 1 2 1 1 2 1 1 1 1 1 1 1 1 1 1 1 2 1 1 34
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Cmo15g01385 Cmo_Chr15 FPKM 172.650345 167.302078 257.555176 252.681946 198.127777 221.562317 202.130447 309.410461 337.538361 328.297119