Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cmo15g01386 ATGACCGTTCCTGCTTCCGGTTTTATGATGGAAAACGGCGGATCAAGCTGCCTGCCACTCCCCCCAGATGTCGAGAATCGGATCGTCACCGACCTGGGGAAGGAATCCGAGTCTAATTTGCAAGAAGGCAATCTCTACTATGTTGTTTCTAATCGGTGGTTTAGAAGATGGCAGTTATATGTTGGACAGCCTACTGAAGAATTTTCTAGCAAAGATCATTCTTCTGATTCCCAACACTGTAATATGGTTCCTTCAAACGTGGTAGAAAGGCCCGGTCCTATTGACAATTCAGATATAGTCGTTAATGGAAGTGATTCTGAGAATAATGATTTAGAGCTAAAAAGATTTTTGGAGGAACGACGGGATTATGTTTTGGTTCCCAGTGCAGTTTGGGAAAAACTGTATGATTGGTACAAAGGGGGGCCACCGTTACCAAGAAAGTTGATATCCCAAGGTGTCACTCAAAAGAATTTTTTTGTGGAGGTTTATCTACTTTGTCTAAAATTGATTGATTCCAGAGATGGAAGTGAATGTATCATACGATTGAGCAAGAAGGCCACCGTATTTGATCTTCGTGAGAAGGTGTTTGCACTTAAAGGAATAAAGCAGGAAAAGGCGTGTATATGGGATTACTTCAACCAGCATAAACAATCAGTATTGGATGCGACAAGCCAAACCCTCGAAGAACTAAACTTGCAGATGGATCAACATACTGGCATGGATGCCACTCGAAATGAGTTAGCTTTGGTAGCTCTTGAACCTTCAAGATCATCTCTGTCAATTGCAGGGGGGCCAGTGATGTCAAATGGACATTCATCCAGTTATGGTTATCAGGGAAGTTCTTTGAGCTCATCGGTTTCTGACATGGATGAAAGAAGTGATCTTAGTAATACTGCAAAGAAAAGAGAGAAGGGTGGTTTGGCAGGGTTGCAGAATTTAGGAAATACATGTTTCATGAACAGTGCCCTTCAATGTTTAGTTCACACGCCACCTCTTGTAGAGTACTTTTTACAAGATTATTCTGAAGAGATCAATGCAGATAATCCTTTGGGAATGCACGGAGAGTTAGCCATTGCTTTTGGGGACTTGTTGAGGAAATTATGGTCGCTGGGACAGACCACAATTGCACCACGTGCATTTAAGGGGAAGTTGGCTCGTTTTGCTCCTCAGTTCAGTGGTTATAACCAGCATGATTCCCAAGAACTTCTTGCCTTCTTACTGGATGGACTGCATGAAGATTTGAATCGTGTTAAACGGAAGCCTTATTTTGAAACAAAGGATTATGATGGTCGTCCAGATGCAGAAGTTGCAGATGAGTGTTGGAGATACCATAGAGCACGAAATGATTCTTTGATTGTAGATGTTTGTCAAGTAGTTCCATGTTGTATAAATGTTAATTGTGTGAAGAAGTTTTCATGTTCATTCTCTGTGACAGTGACTGTGTTCTATGGTGACGGTAGTGGTCTTCCAATGCCATACACTGTGACAGTGCAAAGACATGGTTGTATCAAAGATCTCACCCTTGCATTGACTATTGCATGCTGCTTGAAGAATGATGAAAATCTTCTGCTTGCAGAGGTTTATGATCACCGTATTTACAAATATTTTGATAACCCTCTTGAATCTGTGACTTCAATTAAAGATGAAGAGTATCTAGTTGCATATCGCCTTCCAAAAAGGGAGTCTGGAAGACCAAAGCTCGAGATCATTCACAGATCGCTGGAAAGATGCTCAACTGACCGCCTGAAGGGAATGGAGAGAAAGCTTTTTGGAACTCCTCTAGTCACATATTTGGGAGAAGAGTTCCGTAGTGGAGCCGACATTAATGCAGCTGTGTCTAAGATCCTCGTTCCCTTGAAAAGAACGTACTCTTCAACTAAAGCTCATAGTAGCAAAGAAAATGGCTTCGTTTCTGAAATGAATGATGAACCAGCCAACTGCAGTCCTCGGTCTGTTTCCCAGTCAATTGACATTGAAGAAGAGGAAACATCATCTGAGAACGAGCCATCCTTTCAACTTCTTTTAACAGATGATAGGGGTTTGAGCTGCAAGCCAATTGACAAGGATTCTGCTATAAAGTATGGTCCACTAATAAAGGTTTTCTTGGATTGGACCGACAGAGAACATGAATTATATGATGTGAGCTACATCAAGGATCTTCCTCCCGTTCACCAGACAAGGTTCATGAAGAAAACGCGGCAGGAAGCAATATCTTTATTTTCTTGCTTGGAAGCCTTCCTTACTGAAGAGCCTTTAGGTCCTGATGATATGTGGTACTGCCCTAGGTGCAAGGAGCATAGACAGGCTACAAAGAAGCTAGACTTGTGGAAGTTGCCAGAGATTATTGTTTTTCACTTGAAACGTTTTTCATACAGCAGATATCTCAAAAACAAGCTCGATACCTTTGTGGATTTCCCTATTCACAATCTTGATTTGAGTAAATATGTCAAAAGCAATGATGGAAAGTCTTACTTGTACAACCTATATGCCATTAGCAACCATTATGGTGGTCTTGGCGGTGGTCACTACACTGCATACGCAAAGTTAATCGATGAGAAGAGATGGTACCACTTCGATGACAGTCATGTTTCCCCAGTTGGCGAAGAAGAGATAAAGACATCGGCTGCTTATTTGTTGTTCTATCAAAGAGTTGAAAATTGA 2661 41.49 MTVPASGFMMENGGSSCLPLPPDVENRIVTDLGKESESNLQEGNLYYVVSNRWFRRWQLYVGQPTEEFSSKDHSSDSQHCNMVPSNVVERPGPIDNSDIVVNGSDSENNDLELKRFLEERRDYVLVPSAVWEKLYDWYKGGPPLPRKLISQGVTQKNFFVEVYLLCLKLIDSRDGSECIIRLSKKATVFDLREKVFALKGIKQEKACIWDYFNQHKQSVLDATSQTLEELNLQMDQHTGMDATRNELALVALEPSRSSLSIAGGPVMSNGHSSSYGYQGSSLSSSVSDMDERSDLSNTAKKREKGGLAGLQNLGNTCFMNSALQCLVHTPPLVEYFLQDYSEEINADNPLGMHGELAIAFGDLLRKLWSLGQTTIAPRAFKGKLARFAPQFSGYNQHDSQELLAFLLDGLHEDLNRVKRKPYFETKDYDGRPDAEVADECWRYHRARNDSLIVDVCQVVPCCINVNCVKKFSCSFSVTVTVFYGDGSGLPMPYTVTVQRHGCIKDLTLALTIACCLKNDENLLLAEVYDHRIYKYFDNPLESVTSIKDEEYLVAYRLPKRESGRPKLEIIHRSLERCSTDRLKGMERKLFGTPLVTYLGEEFRSGADINAAVSKILVPLKRTYSSTKAHSSKENGFVSEMNDEPANCSPRSVSQSIDIEEEETSSENEPSFQLLLTDDRGLSCKPIDKDSAIKYGPLIKVFLDWTDREHELYDVSYIKDLPPVHQTRFMKKTRQEAISLFSCLEAFLTEEPLGPDDMWYCPRCKEHRQATKKLDLWKLPEIIVFHLKRFSYSRYLKNKLDTFVDFPIHNLDLSKYVKSNDGKSYLYNLYAISNHYGGLGGGHYTAYAKLIDEKRWYHFDDSHVSPVGEEEIKTSAAYLLFYQRVEN 886
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
15 9435007 9447488 + CmoCh15G013860.1 Cmo15g01386 398894

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cmo15g01386 886 PANTHER UBIQUITIN CARBOXYL-TERMINAL HYDROLASE 16 885 - -
Cmo15g01386 886 ProSitePatterns Ubiquitin specific protease (USP) domain signature 2. 826 843 IPR018200 GO:0004843|GO:0006511
Cmo15g01386 886 Gene3D Cysteine proteinases 607 886 - -
Cmo15g01386 886 Pfam Ubiquitin carboxyl-terminal hydrolase 309 881 IPR001394 GO:0004843|GO:0016579
Cmo15g01386 886 ProSitePatterns Ubiquitin specific protease (USP) domain signature 1. 309 324 IPR018200 GO:0004843|GO:0006511
Cmo15g01386 886 ProSiteProfiles DUSP domain profile. 20 149 IPR006615 GO:0004843
Cmo15g01386 886 Gene3D Cysteine proteinases 291 506 - -
Cmo15g01386 886 SUPERFAMILY Cysteine proteinases 306 884 IPR038765 -
Cmo15g01386 886 Gene3D - 163 248 - -
Cmo15g01386 886 CDD Peptidase_C19R 729 882 - -
Cmo15g01386 886 ProSiteProfiles Ubiquitin specific protease (USP) domain profile. 308 884 IPR028889 -
Cmo15g01386 886 Gene3D - 9 162 IPR035927 -
Cmo15g01386 886 MobiDBLite consensus disorder prediction 274 292 - -
Cmo15g01386 886 MobiDBLite consensus disorder prediction 274 301 - -
Cmo15g01386 886 SMART dusp 39 152 IPR006615 GO:0004843
Cmo15g01386 886 MobiDBLite consensus disorder prediction 628 670 - -
Cmo15g01386 886 PANTHER UBIQUITIN CARBOXYL-TERMINAL HYDROLASE 10-RELATED 16 885 - -
Cmo15g01386 886 SUPERFAMILY DUSP-like 22 149 IPR035927 -
Cmo15g01386 886 Pfam DUSP domain 44 149 IPR006615 GO:0004843
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cmo15g01386 - - - mcha:111023427 1551.57
       

WGDs- Genes

Select Gene_1 Gene_2 Event_name
Cmo06g00541 Cmo15g01386 CCT
Cmo02g00955 Cmo15g01386 CST
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cmo01g00563 Cmo-Chr1:2811124 Cmo15g01386 Cmo-Chr15:9435007 0 dispersed
Cmo02g01339 Cmo-Chr2:7973706 Cmo15g01386 Cmo-Chr15:9435007 0 dispersed
Cmo06g00541 Cmo-Chr6:2610506 Cmo15g01386 Cmo-Chr15:9435007 0 dispersed
Cmo15g01386 Cmo-Chr15:9435007 Cmo20g00156 Cmo-Chr20:772379 0 dispersed
Cmo15g01386 Cmo-Chr15:9435007 Cmo02g00955 Cmo-Chr2:5847075 0 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi2g257 . . . Bda08g00751 Bpe05g00390 . . . Cmo06g00541 . Cma02g00946 Cma15g01323 Car02g00695 Car15g01188 . . Cpe05g00767 . . . . . . . . . . . . . . . . . . . Csa05g00158 Chy09g01340 . . . . . . . Bma05g00539 Bma12g00420 . Cmo02g00955 Cmo15g01386 Cma06g00538 . Car06g00476 . Cpe08g00954 . Bhi12g00079 . . . . . Lcy12g1510 Cla01g00140 Cam01g0145 . . Clacu01g0140 Cmu01g0140 Cre09g2366 Lsi09g00131 . . Cme09g01887
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0005583 2 2 2 2 2 1 2 1 1 1 1 1 2 1 1 2 1 2 1 1 1 1 1 1 1 1 1 2 1 1 40
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Cmo15g01386 Cmo_Chr15 FPKM 0.0 0.0 1.037661 0.781661 9.353121 9.397074 10.830404 0.0 0.0 0.0