Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cmo15g01394 ATGGCGTCCTCCCTCTCCATCTATCATCCATTTTCTTCTAAACTTACTGCTAATTCCAAGCATCTTTCCTCTTCCTTTCTTGCTTCACCCTCTTCAGGGTTGTCTTCAAAGTTCAATTTCTCGCTTCGATTCTTCAGCCATGGCCAATCTTCGTCGCTAATCTCTCCCACTCCAAGGCGTCTCAGTGTTGTCTCAATGGCGCCTCCTAAAGCCAAGCCTGGTGGAAAAGCCAAGAAGGTAATTGGGGTGATTAAGCTTGCTCTGGAGGCTGGAAAGGCTACCCCAGCTCCTCCTGTTGGCCCTGCTCTTGGTTCTAAGGGTGTTAATATTATGGCTTTCTGTAAGGATTACAATGCCAAGACTGCCGACAAGGCTGGCTACGTTATTCCAGTTGAAATTACTGTTTACGATGATAAAAGTTTTACTTTCGTGCTCAAGACTCCCCCTGCTTCAGTTCTTCTTCTCAAGGCTGCTGGTATTTCCCTTTTGAACTGTTTGATTGGATCCATAGTTCCTCAGTGGCTATCAATGTTTGGGCACAAACCCTCCCAGGGATGGAGGGACTGTTGCAGCTTGAGCATTGTGGCTGGGCGGCATACTCGCCTCCCATCACAGCTCGAGTATGCGTTAGGAGTTGAAAAGGGATCAAAAGATCCACAGGCACAAAAAGTGGGAAAGATAACCATTGAACAGCTGCGTGTGATTGCTGCAGAAAAGTTACCAGATTTGAATTGCACAACCATTGAATCAGCAATGAGGGTCATAGCAGGGACAGCAGCCAATATGGGAATTGAGGTCGATCCTCCTGTTCTTGAACCTAAAAAGAAGGAACTTGTGTAG 840 46.67 MASSLSIYHPFSSKLTANSKHLSSSFLASPSSGLSSKFNFSLRFFSHGQSSSLISPTPRRLSVVSMAPPKAKPGGKAKKVIGVIKLALEAGKATPAPPVGPALGSKGVNIMAFCKDYNAKTADKAGYVIPVEITVYDDKSFTFVLKTPPASVLLLKAAGISLLNCLIGSIVPQWLSMFGHKPSQGWRDCCSLSIVAGRHTRLPSQLEYALGVEKGSKDPQAQKVGKITIEQLRVIAAEKLPDLNCTTIESAMRVIAGTAANMGIEVDPPVLEPKKKELV 279
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
15 9480233 9483583 + CmoCh15G013940.1 Cmo15g01394 398902

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cmo15g01394 279 ProSitePatterns Ribosomal protein L11 signature. 253 267 IPR020785 GO:0003735|GO:0005840|GO:0006412
Cmo15g01394 279 Gene3D - 147 279 IPR036769 -
Cmo15g01394 279 SMART rl11c 84 267 IPR000911 GO:0003735|GO:0005840|GO:0006412
Cmo15g01394 279 Pfam Ribosomal protein L11, N-terminal domain 84 141 IPR020784 -
Cmo15g01394 279 SUPERFAMILY Ribosomal protein L11, C-terminal domain 206 267 IPR036769 -
Cmo15g01394 279 Pfam Ribosomal protein L11, RNA binding domain 208 266 IPR020783 GO:0003735|GO:0005840|GO:0006412
Cmo15g01394 279 Gene3D - 75 146 IPR036796 -
Cmo15g01394 279 PANTHER RIBOSOMAL PROTEIN L11 206 267 - -
Cmo15g01394 279 Hamap 50S ribosomal protein L11 [rplK]. 80 268 IPR000911 GO:0003735|GO:0005840|GO:0006412
Cmo15g01394 279 PANTHER 60S RIBOSOMAL PROTEIN L12 206 267 IPR000911 GO:0003735|GO:0005840|GO:0006412
Cmo15g01394 279 SUPERFAMILY Ribosomal L11/L12e N-terminal domain 74 159 IPR036796 -
Cmo15g01394 279 PANTHER 60S RIBOSOMAL PROTEIN L12 52 161 IPR000911 GO:0003735|GO:0005840|GO:0006412
Cmo15g01394 279 CDD Ribosomal_L11 84 266 IPR000911 GO:0003735|GO:0005840|GO:0006412
Cmo15g01394 279 PANTHER RIBOSOMAL PROTEIN L11 52 161 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cmo15g01394 K02867 RP-L11, MRPL11, rplK; large subunit ribosomal protein L11 - csv:101210200 340.117
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cmo03g00650 Cmo-Chr3:5891716 Cmo15g01394 Cmo-Chr15:9480233 1.16E-18 dispersed
Cmo15g01394 Cmo-Chr15:9480233 Cmo07g00377 Cmo-Chr7:1732618 2.66E-18 transposed
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi2g268 . . . . . . . . . . . Cma15g01332 . Car15g01197 . . . . . . . . . . . . . . . . . . . . . . Csa05g00149 Chy09g01346 . . . . . . . . . . . Cmo15g01394 . . . . . . Bhi12g00069 . . Lac11g1879 Hepe06g1420 . Lcy12g1498 Cla01g00132 Cam01g0134 Cec01g0135 Cco01g0136 Clacu01g0130 Cmu01g0132 Cre09g2373 Lsi09g00123 . . Cme09g01894
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0012293 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 0 1 1 1 1 1 1 1 1 1 1 1 29
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Cmo15g01394 Cmo_Chr15 FPKM 9.821413 10.778383 25.373869 27.59248 35.164448 30.864122 40.23436 20.27832 21.724121 23.365002