Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cmo15g01395 ATGTCCGCCACCGCCAAGCTGCTTGTCGCCGATCTCGCTTCCACCGTCCACCAACTCCCTTCCCGCTTCGTCCGCCCCATCGACGACCGTCCAAACTTCTCCCATGTCCGAGCTCCGACCGGCCACTCTTTCCCTGTCATTGACCTCCACAACCTCCACGGCCCCTCTCGTGCTGATGTCGTCGCCCAAATTGGCCAAGCCTGTGAGCGCGACGGTTTCTTTCTGGTGAAGAACCATGGGGTGCCGGAGGAGATGATAAATGGGATGCTGAGATTGGCTAGGGAGTTTTTCCGGCTGCCGGAGTGTGAGAGACTTAAGAGCTATTCCGATGATCCGACGAAGACGACGAGGCTTTCGACGAGTTTCAATGTGAAGACGGAGAAGGTGGCAAATTGGAGAGATTTCTTGAGACTCCATTGTTACCCTCTCGAGCTTTATGTCAATGAATGGCCCGACAATCCTCCATCCTTCAGGAAAGAAGTGGCGGAGTATTGTACAAGTGTGAGGGAATTGACACTAAAGCTATTAGAGGCCATTTCTGAGAGCTTGGGGTTACCAAAAGACTCCATAGCCAATTCAATTGGAGGCCATGGCCAACACATGGCCTTGAACTACTATCCGCCATGTCCACAGCCAGAGCTCACCTATGGCTTACCTGGCCACACCGACCCGAACCTCATCACTCTCCTCCTCCAAGACCAAGTCCCCGGCCTCCAAGCCCTCCACGACAACACTTGGTTCGCTCTCGACCCCATCCCTAACACCTTTATAATTAACATCGGCGATCAAATGCAGGCGTTGAGTAATGACAGATACAAGAGCGTGCTTCATCGAGCTGTTGTGAATAGTGAAACGGAGCGAATTTCGATCCCGACATTTTATTGTCCGTCGCAGGATGCGATGATCGGGCCGTTTAAGGAGCTGGTCGACGACAAGAATAGAGCGGTGTATAGACAATTTACTTATTCAGAATATTACAAGACGTTTTGGAATGAAGGACTTGCAACCAAAAGATGCTTAGATTTGTTTAGAGTTGAATGA 1041 51.01 MSATAKLLVADLASTVHQLPSRFVRPIDDRPNFSHVRAPTGHSFPVIDLHNLHGPSRADVVAQIGQACERDGFFLVKNHGVPEEMINGMLRLAREFFRLPECERLKSYSDDPTKTTRLSTSFNVKTEKVANWRDFLRLHCYPLELYVNEWPDNPPSFRKEVAEYCTSVRELTLKLLEAISESLGLPKDSIANSIGGHGQHMALNYYPPCPQPELTYGLPGHTDPNLITLLLQDQVPGLQALHDNTWFALDPIPNTFIINIGDQMQALSNDRYKSVLHRAVVNSETERISIPTFYCPSQDAMIGPFKELVDDKNRAVYRQFTYSEYYKTFWNEGLATKRCLDLFRVE 346
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
15 9484322 9486642 - CmoCh15G013950.1 Cmo15g01395 398903

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cmo15g01395 346 Pfam non-haem dioxygenase in morphine synthesis N-terminal 45 153 IPR026992 -
Cmo15g01395 346 Pfam 2OG-Fe(II) oxygenase superfamily 199 296 IPR044861 -
Cmo15g01395 346 PANTHER PROTEIN DMR6-LIKE OXYGENASE 2-LIKE 4 338 - -
Cmo15g01395 346 SUPERFAMILY Clavaminate synthase-like 13 334 - -
Cmo15g01395 346 PANTHER OXOGLUTARATE/IRON-DEPENDENT DIOXYGENASE 4 338 - -
Cmo15g01395 346 ProSiteProfiles Fe(2+) 2-oxoglutarate dioxygenase domain profile. 197 296 IPR005123 -
Cmo15g01395 346 PRINTS Isopenicillin N synthase signature 64 81 - -
Cmo15g01395 346 PRINTS Isopenicillin N synthase signature 221 242 - -
Cmo15g01395 346 PRINTS Isopenicillin N synthase signature 256 282 - -
Cmo15g01395 346 Gene3D - 7 332 IPR027443 -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cmo15g01395 K24028 DMR6, DLO; salicylic acid 3-hydroxylase [EC:1.14.11.-] - csv:101209949 578.17
       

WGDs- Genes

Select Gene_1 Gene_2 Event_name
Cmo15g01395 Cmo16g01283 CCT
Cmo15g01395 Cmo16g01283 ECH
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cmo06g00583 Cmo-Chr6:2860753 Cmo15g01395 Cmo-Chr15:9484322 1.99E-65 dispersed
Cmo14g01667 Cmo-Chr14:13140332 Cmo15g01395 Cmo-Chr15:9484322 5.42E-69 dispersed
Cmo15g01395 Cmo-Chr15:9484322 Cmo16g00018 Cmo-Chr16:101453 7.39E-127 dispersed
Cmo18g00448 Cmo-Chr18:2974900 Cmo15g01395 Cmo-Chr15:9484322 6.67E-42 dispersed
Cmo15g01395 Cmo-Chr15:9484322 Cmo14g00238 Cmo-Chr14:1098159 8.66E-77 transposed
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi2g274 . . Bda06g01126 . . . . . . Cmo16g01283 . Cma15g01333 . Car15g01198 . . . . . . . . . . . . . . . . . . . . . Lsi07g01105 . . . Blo03g00789 . . . . Bpe11g00380 . . . . Cmo15g01395 . Cma16g01237 . . . . . . . . . . . . . . . . . . . . . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0007284 0 1 4 1 1 1 1 1 1 1 1 1 1 1 1 1 1 2 0 1 1 1 1 3 2 1 1 1 1 3 37
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Cmo15g01395 Cmo_Chr15 FPKM 13.273495 12.541151 9.3288 9.998644 4.115929 3.455498 4.000263 17.486887 17.736931 19.432417