Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cmo15g01397 ATGGGTTTGTTTAGAATGAAGGGTTTAAAGGATTGCAAGCCTTTGATGGTGATGGTAGCCATAGATTTTGCTTTCGCCATCGTGAATATTCTGCTCGAGACAGTTCTTAATCATGGAATGAACCATTTGGTTCTCATCACTTATCGTCTCTCCATTGCTGCTATTTCCTTGGCTCCCATTGCCTACTTCGCCGAGAAGGACGGCAGAGCCAATCTCTCTGTTCGAATCCTCTGTTACTTGTTCTTCAGCGCCATTGTTGGGGCTTCACTCACCCAATACTGCTTTCTTCTCGGCATCCAACATACCTCTGCCACTTTCGCCTGTGCATTTGTCAACATAGTCCCTGTCGTCACTTTTCTTCTTGCTCTCCCATTTGGGTTGGAGTCGGTGAAGTTGAAATGTAGCAGTGGGAAAGCGAAGGTGATTGGGACGATGGTGTGCATCTCCGGCGCGGTGCTATTGACGACGTACAAGGGGCCGGCATTGGTGAACGCTTCGTACGTCGCACACGCCGTCGGTGGGAAGGTGAAGACGAAGACGGCGGAGAGTTGGACGGTGGGGTGCATAGCTCTGGTGGCTGGAACTCTACTCTGGTCGTCGTGGTTTCTGTTGCAATCGAACATCGGGAAGAGATATCCGTATCAGTACTCGAGCACTGCCATTATGTCCGGCTTCGGCGCCGTCCAATCCGCCGTCTTGAGCCTCTCCACCGGCGCAAAGCTCTCCGCTTGGGCACTCACCGGAAAGATTCAAATTCTCACGGTTTTGTACACTGGGATGATCGGATCAGGAATATGCTTCGTGGGAATGTCGTGGTGCGTTAAGAAGAGAGGTCCAGTATTCACAGCAGCCTTCAGCCCATTGGTTCAAATAATGGCAGCCATGTTAGACATCCCCATCTTGCACGAGCCACTCCATCTCGGAAGCTCTCTTTCTCTACTGCTTCAATCGGTCAAATCCGAGTCTCCCCAGGCCAATACCAGCGCCCATCAGAACAATGAACTCGACCTTGAGAAGCAGAGAGTGGGTCAGCCATCATCAGCATTGGAGCTATCTACCAGTGATGCTGATGCTAATACACCTACTCCTCCATTGACAATTGTTGTTTCTACTAGCTCTCAAGAGGGATTGTTGCCTAAAAAGGAGCTGTTGTCTGCCACTTCTAGCTCTGATGAGCAGTGCAGAATTTGTCAGCAAGACAAGGAAGAAGTCTTGATAGAACTTGGATGTCATTGTCGAGGTGATCTCGCAAACGCTCATCGAACTTGCATAGATACTTGGTTTCATACTAAAGGATCGAACAGATGTGAGATATGCCAGGTCGTAGCGGCGAACGTAGCACCTCCACAATCACATCATGGTGTAGACCAACTACTGGATGTGGAGGATCGATCCGACCTACAGAAATCAAGAACCCCAAAGGCACTGCTTCAGTCCACTTTGGCTGGCTTTTACCATCCTCATAGGGGGTTTGCTACTGGACGTTCTTATATCCATCACACTCGGTGTTTCTGCGTTGCCCGAGTTATTGTGGTGCTTGGACTTGGAACTGTGTTTCGACTTGCTGTGGAGTTCGTTCAGGAGTGGAATTCAACGAGAGTATCGCAAAGGGTGGAATCAAATGTTACCATTGGGTACTTTCCAGCTATATAG 1653 49.3 MGLFRMKGLKDCKPLMVMVAIDFAFAIVNILLETVLNHGMNHLVLITYRLSIAAISLAPIAYFAEKDGRANLSVRILCYLFFSAIVGASLTQYCFLLGIQHTSATFACAFVNIVPVVTFLLALPFGLESVKLKCSSGKAKVIGTMVCISGAVLLTTYKGPALVNASYVAHAVGGKVKTKTAESWTVGCIALVAGTLLWSSWFLLQSNIGKRYPYQYSSTAIMSGFGAVQSAVLSLSTGAKLSAWALTGKIQILTVLYTGMIGSGICFVGMSWCVKKRGPVFTAAFSPLVQIMAAMLDIPILHEPLHLGSSLSLLLQSVKSESPQANTSAHQNNELDLEKQRVGQPSSALELSTSDADANTPTPPLTIVVSTSSQEGLLPKKELLSATSSSDEQCRICQQDKEEVLIELGCHCRGDLANAHRTCIDTWFHTKGSNRCEICQVVAANVAPPQSHHGVDQLLDVEDRSDLQKSRTPKALLQSTLAGFYHPHRGFATGRSYIHHTRCFCVARVIVVLGLGTVFRLAVEFVQEWNSTRVSQRVESNVTIGYFPAI 550
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
15 9508894 9514522 + CmoCh15G013970.1 Cmo15g01397 398905

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cmo15g01397 550 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 380 447 IPR013083 -
Cmo15g01397 550 PANTHER WAT1-RELATED PROTEIN 14 314 - -
Cmo15g01397 550 MobiDBLite consensus disorder prediction 346 365 - -
Cmo15g01397 550 CDD RING_CH-C4HC3_MARCH 394 440 - -
Cmo15g01397 550 ProSiteProfiles Zinc finger RING-CH-type profile. 386 446 IPR011016 GO:0008270
Cmo15g01397 550 PANTHER WAT1-RELATED PROTEIN 14 314 IPR030184 GO:0016021|GO:0022857
Cmo15g01397 550 SUPERFAMILY Multidrug resistance efflux transporter EmrE 48 157 - -
Cmo15g01397 550 Pfam RING-variant domain 394 439 IPR011016 GO:0008270
Cmo15g01397 550 Pfam EamA-like transporter family 18 155 IPR000620 GO:0016020|GO:0016021
Cmo15g01397 550 Pfam EamA-like transporter family 187 315 IPR000620 GO:0016020|GO:0016021
Cmo15g01397 550 SUPERFAMILY RING/U-box 389 442 - -
Cmo15g01397 550 SMART ringv_2 393 440 IPR011016 GO:0008270
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cmo15g01397 - - - csv:101211020 541.191
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cmo13g00529 Cmo-Chr13:6200049 Cmo15g01397 Cmo-Chr15:9508894 1.92E-97 dispersed
Cmo15g01397 Cmo-Chr15:9508894 Cmo11g01277 Cmo-Chr11:8407466 1.05E-57 dispersed
Cmo02g00963 Cmo-Chr2:5907809 Cmo15g01397 Cmo-Chr15:9508894 3.42E-75 transposed
Cmo15g01508 Cmo-Chr15:10237824 Cmo15g01397 Cmo-Chr15:9508894 5.37E-10 transposed
Cmo15g01397 Cmo-Chr15:9508894 Cmo02g00962 Cmo-Chr2:5904866 0 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi2g280 . . . . Bpe05g00394 . . . . . . Cma15g01336 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . Bma05g00547 . . . Cmo15g01397 . . . . . . Bhi12g00063 . . Lac11g1863 Hepe06g1415 . Lcy12g1487 . . . . . . . . . . Cme09g01898
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0002262 1 2 2 2 2 2 3 2 2 2 1 2 2 2 2 3 2 2 2 2 2 2 1 2 1 3 3 2 1 3 60
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Cmo15g01397 Cmo_Chr15 FPKM 6.128205 5.052349 13.48552 13.243834 16.149004 13.58433 16.598236 8.530379 10.201857 13.25777