Gene search
Sequence information
| Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
|---|---|---|---|---|---|---|
| Cmo15g01401 | ATGTTGGAGCCACCGGAGCCTGAGGAGGAAGCTGCTAGTTCTACGGCGGTGGGGTCGGACGGTGGCGATGGAGGAGTTGAGAAGGAACACATGTTCAACAAAGTGGTGACGCCGAGTGATGTTGGGAAATTGAACCGGCTAGTGATTCCAAAGCAACACGCTGAGAGATTTTTCCCCTTAGATTCATCAACAAACGACAAGGGTTTGCTCTTAAATTTCGAAGATCGCAACGGCAAATCATGGCGGTTCCGTTACTCCTACTGGAACAGTAGCCAAAGCTACGTTATGACCAAAGGCTGGAGTCGCTTCGTCAAAGAGAAGCGCCTCGACGCCGGTGATACCGTTTCCTTCCAACGTGGGGTTGGTGAAATTGGAAGAGATCGTCTTTACATTGACTGCCGCCGTGGCCGCCGCCATGAACTTCCCTTTCACCACCACTCTCCCACCACAGTCAGCATCCAACCAAGCATCGTCATCCCAGCAAGCGCCACCGCTTGGGGGCCATTCGTGTGGCAGCCACTCAGCGCCACAACACCTCAATACCTCCCCCATCTGCAAGATCCCACATCGAATAGAGAGTGTTGTCCGTATCCATACGGGAGTGTTGAAACATCTGGAATGATGTTTTTGAGGACAGAGGGAAGAAGGGTAGCCCCAAGATTAGGGGATGAGAGGGAGGTGGAGGTGGAGCCGAGTGGCGGCAACGGCGGCGGTGGTAATTCAATGACGGTGGTTGAAGATACTCCAGCAAAGAGATCAAGACTGAGGCTGTTTGGTGTAAACATGGAGATGGAGGATCCAATTTCATTAACTTCTGATGAATGCGAATTATTATTTTGGGATTAG | 846 | 51.54 | MLEPPEPEEEAASSTAVGSDGGDGGVEKEHMFNKVVTPSDVGKLNRLVIPKQHAERFFPLDSSTNDKGLLLNFEDRNGKSWRFRYSYWNSSQSYVMTKGWSRFVKEKRLDAGDTVSFQRGVGEIGRDRLYIDCRRGRRHELPFHHHSPTTVSIQPSIVIPASATAWGPFVWQPLSATTPQYLPHLQDPTSNRECCPYPYGSVETSGMMFLRTEGRRVAPRLGDEREVEVEPSGGNGGGGNSMTVVEDTPAKRSRLRLFGVNMEMEDPISLTSDECELLFWD | 281 |
Gff information
| Chromosome | Start | End | Strand | Old_gene | Gene | Num |
|---|---|---|---|---|---|---|
| 15 | 9532332 | 9533554 | - | CmoCh15G014010.1 | Cmo15g01401 | 398909 |
Annotation information
| Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
|---|---|---|---|---|---|---|---|---|
| Cmo15g01401 | 281 | PANTHER | B3 DOMAIN-CONTAINING TRANSCRIPTION FACTOR NGA2 | 20 | 266 | - | - | |
| Cmo15g01401 | 281 | Pfam | B3 DNA binding domain | 32 | 135 | IPR003340 | GO:0003677 | |
| Cmo15g01401 | 281 | Gene3D | - | 26 | 147 | IPR015300 | - | |
| Cmo15g01401 | 281 | MobiDBLite | consensus disorder prediction | 1 | 27 | - | - | |
| Cmo15g01401 | 281 | CDD | B3_DNA | 30 | 119 | IPR003340 | GO:0003677 | |
| Cmo15g01401 | 281 | SUPERFAMILY | DNA-binding pseudobarrel domain | 29 | 137 | IPR015300 | - | |
| Cmo15g01401 | 281 | MobiDBLite | consensus disorder prediction | 219 | 248 | - | - | |
| Cmo15g01401 | 281 | SMART | B3_2 | 32 | 137 | IPR003340 | GO:0003677 | |
| Cmo15g01401 | 281 | ProSiteProfiles | B3 DNA-binding domain profile. | 32 | 137 | IPR003340 | GO:0003677 | |
| Cmo15g01401 | 281 | PANTHER | B3 DOMAIN-CONTAINING TRANSCRIPTION FACTOR ABI3 | 20 | 266 | IPR044800 | GO:0003700 |
Duplication type information
| Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
|---|---|---|---|---|---|---|
| Cmo15g01401 | Cmo-Chr15:9532332 | Cmo16g00647 | Cmo-Chr16:3189084 | 3.15E-61 | dispersed | |
| Cmo17g00535 | Cmo-Chr17:5282653 | Cmo15g01401 | Cmo-Chr15:9532332 | 1.54E-69 | transposed | |
| Cmo15g01401 | Cmo-Chr15:9532332 | Cmo02g00966 | Cmo-Chr2:5922021 | 1.33E-97 | wgd |
Transcription factors information
| Select | Gene | Hmm_acc | Hmm_name | Score | E-value | Regulatory Factors | Family |
|---|---|---|---|---|---|---|---|
| 11225 | PF02362 | B3 | 3.60E-28 | CL0405 | Cmo | TF |
Pathway information
| Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
|---|---|---|---|---|---|---|
| Cmo15g01401 | - | - | cpep:111783957 | 529.635 |