Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cmo15g01404 ATGACGAAGCTGTATGCGTCGTGTGCAGCTATGGTGGTGGTGCAGATTGGGTATGGCGGATCCAACATTCTCATGAAAATCGCCAGCGAGAAGGATCTTAATCCTTTCGTCTTCGTCGTGTATCGCCATTTCATCGCCTTCCTCCTCTTGGCTCCTTTCGCTTATGTCATCGACAGAAACAAACCGGCTTCTCTAACGATTTCGACCGCGATTAAGATCTTTTTACTCGCAATTTTAGGGTCAACCATTCACCTGAATCTATTCTACGTTGGAATCGGCTATACTTCGCCGACGGTGGCTTCGGCTTTCAGTAACGTCATTCCGAGCTTGACTTTCGTTATGGCTGTTCTATTCAGATTGGAGAAGGTGAATATTAGAACTGCAAGGGGTGCCGCTAAAGTGGTGGGGACGATTCTGTGCATTGGTGGTTCCCTTATTTTCACGTTATGGAAAGGACCATATGTAACCAAAGCCATCTTCAAGGAGCCGCTCATAGACATATACAAGAATCATGACTCTGGGAATAGCAGTGGCAAGGATTGGATCAAGGGCTCAGCTTTTATTCTTATAAGCGATATTGCTTGGAGTATATGGCTAATTCTACAGGGCATAGTGATTTCGGGCGTGGGGTATTTCCTACAAACCTGGTGCATCAGCCGCAACGGGCCAGTTTTTACTTCAATGTTTAGCCCCTTAATGCTGATATTTGTGGCCATATTCTCAGCATTTGTATTCTCAGAGCGGCTTCATGTGGGCAGCCTGGTAGGAGCTTTCTTTATCGTATTGGGTCTGTATTTGGTGCTGTGGGGGAAGAAAGCAGATCATGTGGTGGCAGCTGAACCGCAGGAGAAAGATAAGGTGTTTGTTGACACTGAAATGCAGAGTACATCTGTAAATGATAGCCAAGTAAAGGGTTCTGTAACATAA 927 45.63 MTKLYASCAAMVVVQIGYGGSNILMKIASEKDLNPFVFVVYRHFIAFLLLAPFAYVIDRNKPASLTISTAIKIFLLAILGSTIHLNLFYVGIGYTSPTVASAFSNVIPSLTFVMAVLFRLEKVNIRTARGAAKVVGTILCIGGSLIFTLWKGPYVTKAIFKEPLIDIYKNHDSGNSSGKDWIKGSAFILISDIAWSIWLILQGIVISGVGYFLQTWCISRNGPVFTSMFSPLMLIFVAIFSAFVFSERLHVGSLVGAFFIVLGLYLVLWGKKADHVVAAEPQEKDKVFVDTEMQSTSVNDSQVKGSVT 308
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
15 9557270 9559835 + CmoCh15G014040.1 Cmo15g01404 398912

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cmo15g01404 308 Pfam EamA-like transporter family 11 140 IPR000620 GO:0016020|GO:0016021
Cmo15g01404 308 Pfam EamA-like transporter family 197 268 IPR000620 GO:0016020|GO:0016021
Cmo15g01404 308 SUPERFAMILY Multidrug resistance efflux transporter EmrE 41 146 - -
Cmo15g01404 308 PANTHER WAT1-RELATED PROTEIN 203 286 IPR030184 GO:0016021|GO:0022857
Cmo15g01404 308 PANTHER WAT1-RELATED PROTEIN 7 204 IPR030184 GO:0016021|GO:0022857
Cmo15g01404 308 PANTHER WAT1-RELATED PROTEIN 203 286 - -
Cmo15g01404 308 PANTHER WAT1-RELATED PROTEIN 7 204 - -
Cmo15g01404 308 SUPERFAMILY Multidrug resistance efflux transporter EmrE 189 272 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cmo15g01404 - - - cmax:111469060 495.738
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cmo15g01404 Cmo-Chr15:9557270 Cmo18g00829 Cmo-Chr18:9683649 2.85E-67 dispersed
Cmo15g01403 Cmo-Chr15:9545809 Cmo15g01404 Cmo-Chr15:9557270 0 tandem
Cmo15g01404 Cmo-Chr15:9557270 Cmo15g01405 Cmo-Chr15:9569938 2.83E-157 tandem
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi2g289 . . . . . . . . . . . Cma15g01342 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . Bda07g00165 . . . . . . . Cmo15g01404 . . . . . . . . . . . . . . . . . . . . . . . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0012233 3 0 0 1 0 0 4 0 0 0 0 0 2 0 0 3 0 0 0 0 0 0 3 1 2 1 0 2 1 4 27
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Cmo15g01404 Cmo_Chr15 FPKM 1.936345 2.137378 3.980054 3.565056 4.626656 3.283169 3.390766 6.910308 7.034632 7.840851