Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cmo15g01408 ATGGAAGGGGTTGGAGGTGGGTCGGGATCGGAATTGTTTGGAGTTAAGCCGTCGTTGACTGTCGATGTTGTAAGTGATTCTCAGCCAGTGGAAGCTGCTTCTCCGATTAGTAGTCGACCTCCTGCATCGTCTTCGTTGAATTATGAGGAACTCATTCGCGGTGGAGGACAGATGGCGATTGATGACGACGCGCTTGTAGGAGAAGATGCTGGCGGCGGTAGCGGCAGCGGCGGCGGCGGCGGCTCGGCTGGGAATCGTTGGCCTCGTCAAGAAACTCTTGCGTTGCTTAAAATTAGATCGGATATGGATTCCGCTTTCCGTGATGCTACCCTCAAAGGTCCTCTCTGGGACGAAGTCTCCAGGAAGCTCGGGGAAATGGGTTATGCAAGAAATGCGAAGAAATGCAAGGAGAAATTTGAGAATGTACAGAAGTATTACAAGCGCACAAAGGAAGGGCGAGGAGGGCGTGGAGATGGGAAGACGTACAAATTCTTCACGCAGCTTGAGGCGCTACACAACGCCGCATCTCAAAACGTGGCATCATCGGGCTTCGGGATTAGCAACCCAACTCCAATCTCAGCCGTCAAAATCTCACAAACCCCAATGGGAATCTTTTCTCCGCCGCCCACCATCGCCGCTCCAATGGGTGTCAGCTTTTCATCCGACACCTCATCTTCATCAACAGAAGAGGAGGAGGAGGAGGAGGAGGAGGAGGAGGAGGAGGAGGAGATGGGTTTTGACGTTGAAGGAGAGCCGTCGAGTGTGGCGGGAAGTAGCCGGAAGCGGCGGCGGAGAGGGGCGGTTAAGGGAAAAAGTGGTGGGCGGAGGAGAAGGCATAAGATGATGATGGGGTTTTTTGAGGGTTTGATGAAGGAAGTGGTGCAGAAACAGGAAGCTATGCAACAGAGATTCCTGGAAGCGATTGAGAGAAGAGAAGAGGAGAGAATGATGAGAGAAGAGACATGGAAGAGGCAAGAAATGGGGAGATTAAGGGAGGAGCAAGAAAAAATGGCTCAAGAACGGACAATTTCTGGGTCTAGAGATGCGGCCATAATTGCTTTTCTTCAGAAATTCACAGGCCAAACCATTGAATTACCGTCAGTGAATATCTCTCCTTCAGCCCCACAACAACACTATGATCTGTCAGTGCCAGTCCCTGCGCCCACGCCTGTCGCTATGCCACTATCCCCTGTCCCCCCACCTCCGCCATTGAAAACCCAGCCGCCTCCAAATGCAATGCCGTTTTTGGATCACCCAATATCAATATCAAATCAGGAAAGCAGCAGCCATGGCGGCCGGGGAGATGGCCCTTCAGAACCCATTTCTTCAAGATGGCCTAAACCCGAAGTTCTAGCGCTAATTAAGCTGCGAGGTGGGCTTGAATCAAGATATCAAGAAATGGGTCCTAAGGGCCCTCTTTGGGAAGAGATTTCAGCTGGAATGAACCGATTGGGTTACAAAAGAAGCGCCAAAAGATGCAAGGAAAAATGGGAGAATATCAACAAATACTTCAAGAAAGTTAAAGAAAGCAACAAAAAACGCCGCGAGGATTCCAAAACTTGCCCCTATTTCGATGAACTCGACGCTCTTTACCGGAAAAAGATCCCCACTGCCGGTGGTTCTGACGGTGGCGCCTCCTTTAGCGACACCGCCAAATTACAACAAACCCACATCCAAATGCCTCATACCACATCCGCTGAAGAACAACCACCACCACCGCCGCCGCCTCCGCCGTCGTCACCACCACCCACAAAGCCAGAAGACATTGTGAATGAGTTGATGGAGCTTCAGAACCTTTACGATGTCGATCACGTCGACGACGAGGACGATGACGATGACGACAACGACAACGACGACAACGACAACACCCGAGAAGAAAAGAGAAGGAACATGGATTACAAAATGGAGTTTCAGACAAGTGAGTTTCAATCAATGGCGGTGGTTCAATAA 1950 50.77 MEGVGGGSGSELFGVKPSLTVDVVSDSQPVEAASPISSRPPASSSLNYEELIRGGGQMAIDDDALVGEDAGGGSGSGGGGGSAGNRWPRQETLALLKIRSDMDSAFRDATLKGPLWDEVSRKLGEMGYARNAKKCKEKFENVQKYYKRTKEGRGGRGDGKTYKFFTQLEALHNAASQNVASSGFGISNPTPISAVKISQTPMGIFSPPPTIAAPMGVSFSSDTSSSSTEEEEEEEEEEEEEEEMGFDVEGEPSSVAGSSRKRRRRGAVKGKSGGRRRRHKMMMGFFEGLMKEVVQKQEAMQQRFLEAIERREEERMMREETWKRQEMGRLREEQEKMAQERTISGSRDAAIIAFLQKFTGQTIELPSVNISPSAPQQHYDLSVPVPAPTPVAMPLSPVPPPPPLKTQPPPNAMPFLDHPISISNQESSSHGGRGDGPSEPISSRWPKPEVLALIKLRGGLESRYQEMGPKGPLWEEISAGMNRLGYKRSAKRCKEKWENINKYFKKVKESNKKRREDSKTCPYFDELDALYRKKIPTAGGSDGGASFSDTAKLQQTHIQMPHTTSAEEQPPPPPPPPPSSPPPTKPEDIVNELMELQNLYDVDHVDDEDDDDDDNDNDDNDNTREEKRRNMDYKMEFQTSEFQSMAVVQ 649
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
15 9597606 9600581 - CmoCh15G014080.1 Cmo15g01408 398916
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cmo15g01408 649 ProSiteProfiles Myb-like domain profile. 443 501 IPR001005 -
Cmo15g01408 649 MobiDBLite consensus disorder prediction 602 620 - -
Cmo15g01408 649 MobiDBLite consensus disorder prediction 394 415 - -
Cmo15g01408 649 ProSiteProfiles Myb-like domain profile. 85 143 IPR001005 -
Cmo15g01408 649 Gene3D - 87 148 - -
Cmo15g01408 649 Gene3D - 445 506 - -
Cmo15g01408 649 CDD GT1 443 508 - -
Cmo15g01408 649 CDD GT1 85 150 - -
Cmo15g01408 649 MobiDBLite consensus disorder prediction 543 565 - -
Cmo15g01408 649 MobiDBLite consensus disorder prediction 621 635 - -
Cmo15g01408 649 MobiDBLite consensus disorder prediction 418 432 - -
Cmo15g01408 649 PANTHER DUPLICATED HOMEODOMAIN-LIKE SUPERFAMILY PROTEIN 71 624 - -
Cmo15g01408 649 MobiDBLite consensus disorder prediction 566 585 - -
Cmo15g01408 649 MobiDBLite consensus disorder prediction 535 649 - -
Cmo15g01408 649 PANTHER - 71 624 - -
Cmo15g01408 649 MobiDBLite consensus disorder prediction 206 280 - -
Cmo15g01408 649 MobiDBLite consensus disorder prediction 64 87 - -
Cmo15g01408 649 Pfam Myb/SANT-like DNA-binding domain 85 171 IPR044822 -
Cmo15g01408 649 Pfam Myb/SANT-like DNA-binding domain 443 530 IPR044822 -
Cmo15g01408 649 SMART sant 441 503 IPR001005 -
Cmo15g01408 649 SMART sant 83 145 IPR001005 -
Cmo15g01408 649 MobiDBLite consensus disorder prediction 259 279 - -
Cmo15g01408 649 MobiDBLite consensus disorder prediction 226 248 - -
Cmo15g01408 649 MobiDBLite consensus disorder prediction 394 446 - -
       

Event-related genes

Select Gene_1 Gene_2 Event_name
Cmo02g00975 Cmo15g01408 CST
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cmo13g00415 Cmo-Chr13:5187491 Cmo15g01408 Cmo-Chr15:9597606 2.92E-18 dispersed
Cmo15g01408 Cmo-Chr15:9597606 Cmo20g01084 Cmo-Chr20:10264768 6.55E-21 dispersed
Cmo18g00936 Cmo-Chr18:10531114 Cmo15g01408 Cmo-Chr15:9597606 3.04E-19 dispersed
Cmo15g01408 Cmo-Chr15:9597606 Cmo02g00975 Cmo-Chr2:6010106 0 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
11227 PF13837 Myb_DNA-bind_4 7.70E-23 CL0123 Cmo TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cmo15g01408 - - cmos:111435698 1033.09