Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cmo15g01416 ATGAGTATTAGAAATTGGGTAAGGTTTTCTGGTTGCGAGGCACGGTGGACTTGGGCATCTCCGGCGGCGGATTCTGGCCGTGGAGGACAGTTGGATGCATTAGATGGGAAGAAGAACAGTAGATATATAATTAGATGGTCGTTGGAAAAGTTTCTACCTGAGGGCATCATTAATTTCAAGCTGCTACATGTCACCCCGAGGATTACTACTGTCCCAACTCCAATGGGAAATTCAATTCCAGTTTCACAAGTTCGTGACGATGTCGCTGCAGCTTATAGGAAAGAAATCGGGTGGCAGACGAACGAAAAGCTTCTTCCATACACGAAGATGTTTGCTCAGAGAAAGGTTCAACTTGATGTTGTTACTCTTGAAGCAGATGATGTAGCAAATGCAATCATAGAAGAGGTCACAAAGTGTTCAATCAGCAAGCTTGTTATAGGAGTTTCATCACAGGGTTTTTTCTCAAGGAAACTAAATGGTCTATCCTCAAGAATATCAGCACTTGCACCAAGACATTGTACAGTCTATGCTATTTCAAAAGGACAATTAGCCTCAATACGGCCGCCTGATATGGAGACAAACGTGAGCATTAAAGATGATGCGAGTGAATCAAGCTCTGCAAATAGCTACTTGAGCTATTCATCCAGCTCAGTTACTGATAGCAGTTCGAGCTTAACTACGTCCTACTCCGATTTCCCTTCTTCTTCCCCGTCCCTACCGTTACAACGATTTCAAGCTCTTTCAACCATCAACCAGACTCTTCTTACGACGAAATCAAGCCCCATTAAAGCTGACCATTCTAGATGTCAATCTGTTGATATTGAGGATCAGGTGGATGGCGTTCGTTCTTCTTCCTATGTTTCGGATTGCGTACGAACATTGAGTCGAGACTCTAGCTGTAAAAGTTTGCCGATGGATGGCCAATCTTGGGTTGATGAAGCTTCGTCCTCGGGCGCGTTCGGTGATCATGTTTCATGTGAAAGTCAGACGGATGTCAACTTTGAGCTTGAAAAGTTGAGAATCAAACTAAGACACGCGAGAGGAATGTACGCAATCGCTCAACGAGAGACGATCGATGCCTCTCGAAAGCTGAACCATCTAAATAAACAACGATCCGAGGACGCTAGGAAGCTCGACGAGATCAAGAACAGAGAGGTGGCTGCCAAAGAATTTGCAAGGGAAGAGAGAACGAAGCGTGAAGCTTTAAGAAGAGAAGCAAAGTACGTAAAAGAACGCGCCGAAAGAGAAGGCATCTATAGGAAGGAAGCAGAGACAAAAGCTCTTCAAGATGCCAAAGAGAAAGGAAAGCATGAGAATGCTCTTGAAGGACCTCTGCAGCAATACCAACATTTTCAGTGGGAAGATATTGTTTCTGCAACATCATCTTTCTCAGAGGATCTTAAGCTTGGAATGGGAGCACATGGAACAGTTTATAAGTGCAGTTTACATCATACAACTGTAGCAGTAAAGGTTCTTCATTCTAGAGATGATCACAAAAAGACACAATTTCTTCAGGAGCTCGAAATCTTGAGCAAAATCCATCATCCTCATCTACTACTCCTCCTCGGTGCATGTCCGGACATGAACTGTCTGGTTTATGAATACATGGAAAATGGTAGCTTGGAGGATAGGTTATACTGCAGAGGCAATACACCTGCAATTCCATGGTATGAGAGATTCCGAATAGCTTGGGAAATAGCCTCGGCTCTCGTCTTTCTTCACAGCTCGAAACCAAAACCGATAATCCACCGTGATCTTAAGCCAGCAAACATATTACTCGACCGAAACCTCGTGAGCAAAATCGGCGACGTCGGTCTATCTACCGTGTTCAACTCGGACCCATTAATGTCTACTGCATTCAAGAACAGTGGACCTGTTGGGACTCTCTGTTACATTGATCCCGAGTATCAACGAAGCGGATTAATCTCGCCGAAGTCGGACGTTTATGCTTTTGGAATGGTAATCTTGCAGTTACTAACTGCAAAACCAGCAGTAGCACTAACCCATGTGGTGGAAACAGCCATTGATAACTGCAGTTTAGATAAGGTTCTGGATATAGAGGCTGGACATTGGCCGGTGGAAGAAACATATGAACTAGCAAGATTAGGACTTCACTGTGCAGAGATGCAACGTAAAGATAGGCCTGACTTGAAGGATCATGTGCTTCCCTTATTGCTGACACTGAAAAAGGTTGCTGATGAGGCTCGCAGCTTAGCCTCGAAAGTTCCAGCTCCGATTCCCAATCATTTCATCTGTCCAATTCTTCAGGACGTGATGAATGACCCGTGTGTAGCAGCGGATGGATACACATACGATCGTTGGGCGATCGAGAAGTGGCTACAAGAGAACGATAACTCACCGATCACGAAGTTGCCATTGCCAGATAAGAATTTGATACCAAATTTCAGTCTTCTCTCTGCAATTGTTGAGTGGAACTCCAGAAAAAACTGA 2451 44.31 MSIRNWVRFSGCEARWTWASPAADSGRGGQLDALDGKKNSRYIIRWSLEKFLPEGIINFKLLHVTPRITTVPTPMGNSIPVSQVRDDVAAAYRKEIGWQTNEKLLPYTKMFAQRKVQLDVVTLEADDVANAIIEEVTKCSISKLVIGVSSQGFFSRKLNGLSSRISALAPRHCTVYAISKGQLASIRPPDMETNVSIKDDASESSSANSYLSYSSSSVTDSSSSLTTSYSDFPSSSPSLPLQRFQALSTINQTLLTTKSSPIKADHSRCQSVDIEDQVDGVRSSSYVSDCVRTLSRDSSCKSLPMDGQSWVDEASSSGAFGDHVSCESQTDVNFELEKLRIKLRHARGMYAIAQRETIDASRKLNHLNKQRSEDARKLDEIKNREVAAKEFAREERTKREALRREAKYVKERAEREGIYRKEAETKALQDAKEKGKHENALEGPLQQYQHFQWEDIVSATSSFSEDLKLGMGAHGTVYKCSLHHTTVAVKVLHSRDDHKKTQFLQELEILSKIHHPHLLLLLGACPDMNCLVYEYMENGSLEDRLYCRGNTPAIPWYERFRIAWEIASALVFLHSSKPKPIIHRDLKPANILLDRNLVSKIGDVGLSTVFNSDPLMSTAFKNSGPVGTLCYIDPEYQRSGLISPKSDVYAFGMVILQLLTAKPAVALTHVVETAIDNCSLDKVLDIEAGHWPVEETYELARLGLHCAEMQRKDRPDLKDHVLPLLLTLKKVADEARSLASKVPAPIPNHFICPILQDVMNDPCVAADGYTYDRWAIEKWLQENDNSPITKLPLPDKNLIPNFSLLSAIVEWNSRKN 816
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
15 9652325 9662228 + CmoCh15G014160.1 Cmo15g01416 398924
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cmo15g01416 816 SUPERFAMILY Protein kinase-like (PK-like) 443 724 IPR011009 -
Cmo15g01416 816 SMART Ubox_2 749 811 IPR003613 GO:0004842|GO:0016567
Cmo15g01416 816 PANTHER U-BOX DOMAIN-CONTAINING PROTEIN 35 33 812 - -
Cmo15g01416 816 SMART serkin_6 463 725 IPR000719 GO:0004672|GO:0005524|GO:0006468
Cmo15g01416 816 Coils Coil 364 384 - -
Cmo15g01416 816 CDD RING-Ubox_WDSUB1_like 750 790 - -
Cmo15g01416 816 Gene3D HUPs 31 176 IPR014729 -
Cmo15g01416 816 SUPERFAMILY Adenine nucleotide alpha hydrolases-like 33 170 - -
Cmo15g01416 816 ProSitePatterns Serine/Threonine protein kinases active-site signature. 581 593 IPR008271 GO:0004672|GO:0006468
Cmo15g01416 816 ProSitePatterns Protein kinases ATP-binding region signature. 469 490 IPR017441 GO:0005524
Cmo15g01416 816 Pfam Protein tyrosine and serine/threonine kinase 468 719 IPR001245 GO:0004672|GO:0006468
Cmo15g01416 816 Coils Coil 336 356 - -
Cmo15g01416 816 ProSiteProfiles Protein kinase domain profile. 463 725 IPR000719 GO:0004672|GO:0005524|GO:0006468
Cmo15g01416 816 CDD STK_N 33 181 - -
Cmo15g01416 816 SUPERFAMILY RING/U-box 740 814 - -
Cmo15g01416 816 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 745 816 IPR013083 -
Cmo15g01416 816 PANTHER OS02G0152300 PROTEIN 33 812 - -
Cmo15g01416 816 Pfam U-box domain 746 815 IPR003613 GO:0004842|GO:0016567
Cmo15g01416 816 Gene3D Phosphorylase Kinase; domain 1 432 535 - -
Cmo15g01416 816 Gene3D Transferase(Phosphotransferase) domain 1 536 741 - -
Cmo15g01416 816 Coils Coil 392 412 - -
Cmo15g01416 816 ProSiteProfiles U-box domain profile. 745 816 IPR003613 GO:0004842|GO:0016567
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cmo15g01416 Cmo-Chr15:9652325 Cmo01g01633 Cmo-Chr1:12395026 1.27E-127 dispersed
Cmo18g01279 Cmo-Chr18:12396337 Cmo15g01416 Cmo-Chr15:9652325 5.25E-85 dispersed
Cmo15g01416 Cmo-Chr15:9652325 Cmo02g00983 Cmo-Chr2:6042212 0 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
74934 PF07714 PK_Tyr_Ser-Thr 7.80E-40 CL0016 Cmo PK
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cmo15g01416 - - csv:101217665 1312.75