Gene search


Sequence information


Select Gene Cds Cds_length GC_content Pep Pep_length
Cmo15g01435 ATGGCCCCTACTTCCCTGGCTTATCGCTTCCGACAATCCGTTGCCCCGACCGCCCTCCGATCCTATGCTGCCGAGTTCATCTCCACCTTCTTCTACGTCTTCTTCGTTGTTGGAGCATCAATCGCCTCCCGGAAGTTTGTGCCCGGGGCTGCTGCAACCGACCCATCGAGCCTTTTGGTGGTGGCTATAGCCAATGCCTTTGCTTTGGCCTCAGCCATTTACATTGCTGCCAACGTCTCTGGCGGACATGTCAACCCGGCGGTGACGTTCGGGATGGCAGTCGGCGGCCATATCAGTGTTCCTACCGCTCTCTTCTATTGGTTTGCTCAAATGCTTGCCTCTATCATGGCTTGCATTGTTCTTAGAGTCACCATTGTTGGACAGCGCGTTCCAAGCTATGTCATTGCCGAGGAGATGACGGGCTTCGGAGCATCGGTGGTAGAAGGTGTATTGACGTTTGCTCTAGTGTACACTGTTTTTGTCGCTAGTGACCCGAGAAGAGGTCCATGCAATGCGATCGGCGCTGTGATGGTCGGGCTGATGGGCGGAGCCAACGTGCTGGCTGCCGGGCCATTTTCCGGTGGATCGGTGAACCCAGCGTGTGCGTTCGGGTCGGCAATTGTGGCTGGGAGTTTCAAGAACCAGGCAGTGTACTGGGTTGGGCCGTTGATCGGAGCAGCTCTGGCCGGGATTGTTCACGATAATGTGATTTTTCCGACCGAAAATGTAGATTCATTCACAGGGGTTCCTGAGGTTGTTGCTGTCTCACTCCGGTCTACGTATCCAGAGCTGAAAACCACACCTTCATCTCCGGTGAAGCTAATCTCACAGTTTACACCAATGGCGGTGGCTCCCTTCTCCACCAGTTTATTCCCGCCATTTCCTTCTATCTTCAAAACCTCATTATTCACCATTAAATCCTTCAAAACTCGTTCAACTTCCTCCCTCATACTCTCCCAATTTTCACTCGAAACCCACCACAAAAAACCTCCAACCGCCGACCCACCGGAATTTGACGGCACTGGCGCCGCCGCGCCCACCCGAGGCGACCGATTCCTCGAACACCATCATTCCGTCGAAGCTGTCAATTTCGTGCTCAAAGAGAACAAGAAGAATCGGAAAAAAAAGAAGGATAAGGCGTTGAAGGTTTCTTTGGCGGTTGCTTCTTGTTATGGCTGTGGTGCTCCGTTGCAGACCTTGGAATCGGATGCTCCGGGTTATGTAGAACCGGAAACCTACGAATTAAAAAAGAAGCATCACCAACTTAGAAGAGTTATATGTGGGAGGTGCCGCCTCTTATCTCATGGTCACATGATAACTGCTGTGGGTGGAAATGGAGGTTATTCAGGAGGAAAGCAATTCATCACGGCCGAGGAGCTTCGAGTAAAGCTGTCTCACTTACGTTACGAGAAGGCTTTGATTGTGAAATTGGTTGATATAGTTGACTTTAATGGAAGTTTTTTGGCACGTGTGCGTGATCTTGCTGGTGCGAATCCAATAATACTGGTGGTCACTAAGGTCGATCTCCTTCCCAAGGGGACTGATCTGAACTGTATTGGTGATTGGGTTGTGGAGGCCACTGTCAAAAAGAAGCTTAGTGTTCTGAGTGTCCATCTGACGAGCTCGAAGTCTTTGGTTGGAGTAGCTGGAGTAGTAGCGGATATTCAAAAGGAGAAAAAGGGGCGGGATGTCTACATTCTGGGCTCAGCTAATGTTGGGAAGTCTGCTTTCATCAACGCTTTGTTGAAAAAGATGGCTGAAAGGGATCCGGTTGCCGCAGCAGCTCAAAAATACAGACCCATACAATCTGCTGTTCCTGGAACTACTTTAGGTCCAATACAAATTGATGCTTTCTTAGGAGGAGGGAAAATATTTGACACACCTGGAGTCCATCTCCACCATAGGCTAGCTGCGGTCGTTCATTCCGAAGATCTTCCTGCCCTGGCTCCTCAAAGTCGTCTGAGGGGTCAAAATTTCCAAGTTGATCAATTAGCAACTGACAATGAAATGGGAAGCAAGGACTTATCCAGTGGGTTGAATGGATTTTCTATATTTTGGGGAGGTCTTGCGAGAGTAGATTTACTAAAGGTTCAACCAGAAACATGTTTGACATTTTATGGTCCAAAAGGATTGCAGATCCACGTGGTGCCCACTGAAAAAGCAGATGAATTTTATGAGAAAGAACTAGGAATTTCACTAACACCTCCATCTGGAAAACAAGCAAGGGATGACTGGAGAGGGCTCGAAGTAATGCGTCAATTGAAGATAAATTTTGAGGACGAGCAAAGGCCTGCTTGTGATGTGGCTATATCAGGCTTGGGATGGATCACTTTTGAACGAAAGAAGTCGCTCCAAAATAATCACTCAGATTTAGAATCATCCGTCGATGAACTCAAGTTGGCTGTACATGTCCCCAAGCCAGTGGAGATTTTCGTTCGACCTCCCATGCCCGTTGGTAAAGCTGGATCGGAATGGTATCAGTACCGCGATTTGACAGAAGAGGAAGAGGAAACAAGACCAAGATGGTTTTTTTAG 2535 48.64 MAPTSLAYRFRQSVAPTALRSYAAEFISTFFYVFFVVGASIASRKFVPGAAATDPSSLLVVAIANAFALASAIYIAANVSGGHVNPAVTFGMAVGGHISVPTALFYWFAQMLASIMACIVLRVTIVGQRVPSYVIAEEMTGFGASVVEGVLTFALVYTVFVASDPRRGPCNAIGAVMVGLMGGANVLAAGPFSGGSVNPACAFGSAIVAGSFKNQAVYWVGPLIGAALAGIVHDNVIFPTENVDSFTGVPEVVAVSLRSTYPELKTTPSSPVKLISQFTPMAVAPFSTSLFPPFPSIFKTSLFTIKSFKTRSTSSLILSQFSLETHHKKPPTADPPEFDGTGAAAPTRGDRFLEHHHSVEAVNFVLKENKKNRKKKKDKALKVSLAVASCYGCGAPLQTLESDAPGYVEPETYELKKKHHQLRRVICGRCRLLSHGHMITAVGGNGGYSGGKQFITAEELRVKLSHLRYEKALIVKLVDIVDFNGSFLARVRDLAGANPIILVVTKVDLLPKGTDLNCIGDWVVEATVKKKLSVLSVHLTSSKSLVGVAGVVADIQKEKKGRDVYILGSANVGKSAFINALLKKMAERDPVAAAAQKYRPIQSAVPGTTLGPIQIDAFLGGGKIFDTPGVHLHHRLAAVVHSEDLPALAPQSRLRGQNFQVDQLATDNEMGSKDLSSGLNGFSIFWGGLARVDLLKVQPETCLTFYGPKGLQIHVVPTEKADEFYEKELGISLTPPSGKQARDDWRGLEVMRQLKINFEDEQRPACDVAISGLGWITFERKKSLQNNHSDLESSVDELKLAVHVPKPVEIFVRPPMPVGKAGSEWYQYRDLTEEEEETRPRWFF 844
       

Gff information


Chromosome Start End Strand Old_gene Gene Num
15 9743965 9752908 + CmoCh15G014350.1 Cmo15g01435 398943
       

Annotation information


Select Seq ID Length Analysis Description Start End IPR GO
Cmo15g01435 844 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 473 634 IPR027417 -
Cmo15g01435 844 Coils Coil 781 801 - -
Cmo15g01435 844 Pfam 50S ribosome-binding GTPase 564 631 IPR006073 GO:0005525
Cmo15g01435 844 Gene3D Glycerol uptake facilitator protein. 6 247 IPR023271 -
Cmo15g01435 844 ProSitePatterns MIP family signature. 83 91 IPR022357 -
Cmo15g01435 844 Gene3D - 458 634 IPR027417 -
Cmo15g01435 844 Pfam Major intrinsic protein 16 233 IPR000425 GO:0015267|GO:0016020|GO:0055085
Cmo15g01435 844 MobiDBLite consensus disorder prediction 326 347 - -
Cmo15g01435 844 SUPERFAMILY Aquaporin-like 13 242 IPR023271 -
Cmo15g01435 844 CDD YqeH 427 630 - -
Cmo15g01435 844 PRINTS Major intrinsic protein family signature 147 165 IPR000425 GO:0015267|GO:0016020|GO:0055085
Cmo15g01435 844 PRINTS Major intrinsic protein family signature 65 89 IPR000425 GO:0015267|GO:0016020|GO:0055085
Cmo15g01435 844 PRINTS Major intrinsic protein family signature 102 121 IPR000425 GO:0015267|GO:0016020|GO:0055085
Cmo15g01435 844 PRINTS Major intrinsic protein family signature 20 39 IPR000425 GO:0015267|GO:0016020|GO:0055085
Cmo15g01435 844 PRINTS Major intrinsic protein family signature 216 236 IPR000425 GO:0015267|GO:0016020|GO:0055085
Cmo15g01435 844 PRINTS Major intrinsic protein family signature 179 201 IPR000425 GO:0015267|GO:0016020|GO:0055085
Cmo15g01435 844 PANTHER NO-ASSOCIATED PROTEIN 1, CHLOROPLASTIC/MITOCHONDRIAL 310 844 IPR044229 GO:0003924
Cmo15g01435 844 ProSiteProfiles Circularly permuted (CP)-type guanine nucleotide-binding (G) domain profile. 457 633 IPR030378 GO:0005525
Cmo15g01435 844 CDD MIP 20 236 IPR000425 GO:0015267|GO:0016020|GO:0055085
       

Duplication type information


Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cmo15g01435 Cmo-Chr15:9743965 Cmo18g00087 Cmo-Chr18:583155 1.73E-49 dispersed
Cmo20g00048 Cmo-Chr20:285600 Cmo15g01435 Cmo-Chr15:9743965 3.68E-23 dispersed
Cmo15g01435 Cmo-Chr15:9743965 Cmo03g01198 Cmo-Chr3:9354988 5.05E-55 transposed
       

Pathway information


Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cmo15g01435 K13427 - csv:101215455 978.778