Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cmo15g01444 ATGGAGGAGAAAGAGGGAGTGGATTTTGGATTTGCAGTAGAAGTGAGCCAAGCACCAGAGAGCTTAGGAATGATGGATTCGAGACCTGAAAATACAAGCACAGATAGTGAGTCACCGCCGCCGCCGCCGCAGCCGCTGGCGAGTGTTCCAACGGTGGCGGCTACAGATGGGAAGAAGAAAAGAGGAAGGCCGAGAAAGTACGGTCCCAATGGGACTGTAGCTCCAACTTTGTCGCCAATGCCGATTTCGTCTTCGATTCCGCTGAGTGGAGAATTTCCGGTTTGGAAACGGGGAAGAGGGCGGTCAGTAGAGTCGATTAAGAAGCCGCGACGAGGGTACGAATTTGAGATTCCAGGTAACAAGGTTGCCTTCATTGCTGGAGCAGATTTCACACCTCACGTGATCACTGTTAATATTGGTGAGGATGTTAACTTGAAAATCATGTCATTTTCTCAACAAGGATCTCGGGCAATTTTTATACTCTCTGCTAATGGTATGGTTTCGAATGTTACACTTCGGCAGTCAACATCTTCTGGGGGCACGCTAACGTATGAGGGTCGATTTGAGATACTTTCGTTGTCTGGATCATATATGCCTTCTGAGAGCAGTGGAACAAAGAGCCGATCTCGAGGGGTGAGTGTTTCTTTGGCTGGCTCAGATGGCCGAGTGATGGGTGGAGAACTTGCCGGCATGCTGATAGCAGCTGGTCCAGTACAGGTGGTGGTGGGCAGTTTCCTACCCCCAGTTCACCAGAAGGAACATAAACCAAAGAAGAGTAGGATGGAACCTAAATCGAACGCAATTTTACCTCCAGCCGATGTTCTTTCTGGCGAAGGGACGAACGGAGTCCTTGGCGGAGTGGAGGCCATAGTCCCATCTACTCTAATTGAAGATAAACCAACCTCTTTAGACCAAAATCCAGCGTCTAAAACTCCACAAGTCAACGAAAAGTTACCATTTCCACAAGAATCAAGAGGTGTACTCAACCATTCAAACCATGAGGTTTCTTGTTGA 1014 48.42 MEEKEGVDFGFAVEVSQAPESLGMMDSRPENTSTDSESPPPPPQPLASVPTVAATDGKKKRGRPRKYGPNGTVAPTLSPMPISSSIPLSGEFPVWKRGRGRSVESIKKPRRGYEFEIPGNKVAFIAGADFTPHVITVNIGEDVNLKIMSFSQQGSRAIFILSANGMVSNVTLRQSTSSGGTLTYEGRFEILSLSGSYMPSESSGTKSRSRGVSVSLAGSDGRVMGGELAGMLIAAGPVQVVVGSFLPPVHQKEHKPKKSRMEPKSNAILPPADVLSGEGTNGVLGGVEAIVPSTLIEDKPTSLDQNPASKTPQVNEKLPFPQESRGVLNHSNHEVSC 337
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
15 9798955 9804781 + CmoCh15G014440.1 Cmo15g01444 398952
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cmo15g01444 337 MobiDBLite consensus disorder prediction 250 274 - -
Cmo15g01444 337 MobiDBLite consensus disorder prediction 298 318 - -
Cmo15g01444 337 Pfam Plants and Prokaryotes Conserved (PCC) domain 132 245 IPR005175 -
Cmo15g01444 337 Gene3D - 132 263 - -
Cmo15g01444 337 SUPERFAMILY AF0104/ALDC/Ptd012-like 129 259 - -
Cmo15g01444 337 ProSiteProfiles PPC domain profile profile. 127 266 IPR005175 -
Cmo15g01444 337 CDD DUF296 131 245 IPR005175 -
Cmo15g01444 337 PANTHER AT-HOOK MOTIF NUCLEAR-LOCALIZED PROTEIN 9 8 320 IPR039605 GO:0003680
Cmo15g01444 337 PANTHER AT-HOOK MOTIF NUCLEAR-LOCALIZED PROTEIN 3 8 320 - -
Cmo15g01444 337 MobiDBLite consensus disorder prediction 1 82 - -
Cmo15g01444 337 MobiDBLite consensus disorder prediction 297 337 - -
       

Event-related genes

Select Gene_1 Gene_2 Event_name
Cmo15g01444 Cmo18g01215 CCT
Cmo15g01444 Cmo18g01215 ECH
Cmo02g01022 Cmo15g01444 CST
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cmo15g01234 Cmo-Chr15:8497053 Cmo15g01444 Cmo-Chr15:9798955 4.65E-78 dispersed
Cmo15g01444 Cmo-Chr15:9798955 Cmo18g01215 Cmo-Chr18:12076006 3.17E-105 dispersed
Cmo15g01444 Cmo-Chr15:9798955 Cmo02g01022 Cmo-Chr2:6215634 1.70E-168 wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cmo15g01444 - - csv:101211908 493.426