Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cmo15g01463 ATGGTTCGAGGAAAAGTTGAAATGAAACGGATTGAGAATTCGACAAGCCGTCAAGTGACATTCTCAAAGAGACGAAATGGGATATTGAAAAAGGCTTATGAGCTTTCTGTTCTTTGTGATGCTGAAGTTTCTGTCATCATTTTCTCTCAGAAAGGAAGGCTCTATGAGTTCTCCAGCTCCATTATGCAAAAGACAATCGAACGCTACCGCAAGTATGGGAAAGGTGGAGAAACCAACACTTTTCAATCCGAAGGATATATGCAGGGTTTGTACTAA 276 40.58 MVRGKVEMKRIENSTSRQVTFSKRRNGILKKAYELSVLCDAEVSVIIFSQKGRLYEFSSSIMQKTIERYRKYGKGGETNTFQSEGYMQGLY 91
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
15 9931669 9934895 - CmoCh15G014630.1 Cmo15g01463 398971
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cmo15g01463 91 Pfam SRF-type transcription factor (DNA-binding and dimerisation domain) 10 57 IPR002100 GO:0003677|GO:0046983
Cmo15g01463 91 SUPERFAMILY SRF-like 3 76 IPR036879 GO:0003677|GO:0046983
Cmo15g01463 91 Gene3D - 13 88 IPR036879 GO:0003677|GO:0046983
Cmo15g01463 91 PANTHER MADS BOX PROTEIN 1 81 - -
Cmo15g01463 91 CDD MADS_MEF2_like 3 72 IPR033896 GO:0000977|GO:0045944
Cmo15g01463 91 PRINTS MADS domain signature 23 38 IPR002100 GO:0003677|GO:0046983
Cmo15g01463 91 PRINTS MADS domain signature 3 23 IPR002100 GO:0003677|GO:0046983
Cmo15g01463 91 PRINTS MADS domain signature 38 59 IPR002100 GO:0003677|GO:0046983
Cmo15g01463 91 ProSiteProfiles MADS-box domain profile. 1 61 IPR002100 GO:0003677|GO:0046983
Cmo15g01463 91 PANTHER MADS-BOX PROTEIN SOC1 1 81 - -
Cmo15g01463 91 ProSitePatterns MADS-box domain signature. 3 57 IPR002100 GO:0003677|GO:0046983
Cmo15g01463 91 SMART madsneu2 1 60 IPR002100 GO:0003677|GO:0046983
       

Event-related genes

Select Gene_1 Gene_2 Event_name
Cmo02g01041 Cmo15g01463 CST
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cmo15g01463 Cmo-Chr15:9931669 Cmo08g00912 Cmo-Chr8:5937954 9.74E-37 dispersed
Cmo15g01463 Cmo-Chr15:9931669 Cmo02g01041 Cmo-Chr2:6328409 2.30E-43 transposed
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
11231 PF00319 SRF-TF 6.50E-27 No_clan Cmo TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cmo15g01463 - - csv:101212323 160.614