Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cmo16g00013 ATGGAATCCCACTTAACTAAAAATCTTTTCATGGAAGTAAAGGGCAAAAGGTTTTCAAAAGCAGGAATTGGGTTATGTATATTAGCGTTGGAATACGTGGCAAGCATGGTGATTAAGCAGCAGCAGCAGCAGGAAGAAGCAAAGGTAGAGGAGATGAAATTGGAGGAAGCCAAGCCTTGTCCTTGTCCTCCGATCGTATTGTTGGTGGATCTTCATTGCAGTGGGTGTGCAAAGAAAATAGAAAAGTGTATTATGAGAATCAGAGGTGCTCTTTTATGTAACCATTTGAATAAAGTAGGAGTGGAAGGGGTGAGCATTGACATGGCGAAAAATGAAGTAACCATAAAAGGAATAGTAGACCCAGATGCGGTTTGCGACAAAATCACCACCAAGACCAAGAGGGTAGCCGAAGTGTTGTCCCCATCGCCGCCGCTGCCTGAGGGGGAACCCAGCCCCCACCTAATTGTTAACTCCCAGTTGAAGGTGGTGGAATTGAACGTCAACATGCACTGCGACGCCTGTGCTCACCAGCTCAAGAAGAAGATACTCAAAATGAGAGGAGTCCAAACAGCATCCACAGAATTGAGCACAGGCAAGGTAGTGGTAACAGGAACCATGGATGGGAATAAGCTCGTGGACTACGTGTACAGACGCACCAAAAAACAAGCCAGAATAGTTCCACAGCCCCAACCCACAGCCACGACACCAGAACAAGAGCCATTAAAACCCGAACAAAGCAAAGAAGAGCAGGCGGCACCAGCACCACCAGCACCACCAGAGGAGATTAAGACAGAGGACGCTGCTGCACCCCAAGCCCAAGGAACAGACACGAACAATAATGACAAGGAAGAGGTACAACCAAAAGCGGCGGAAGAGGGTGGGGGGCAGGTGGTGGAAGCGACAGCCGAGACAAAACCAAATGTGGAGGTGGAGGAAGCGAAGGCGGCGGAGGCTGGAGATGAGATGATGGGTGAGGATGATCATGAAAGCATGAAGAGGATGATGTACCAATATTATCAATATCAACCACTTTACGTTATGGAACGAATTCCACCGCCTCAGCTGTTCAGCGATGAGAATCCCAATGCGTGTTGCGTTCTATAA 1104 48.19 MESHLTKNLFMEVKGKRFSKAGIGLCILALEYVASMVIKQQQQQEEAKVEEMKLEEAKPCPCPPIVLLVDLHCSGCAKKIEKCIMRIRGALLCNHLNKVGVEGVSIDMAKNEVTIKGIVDPDAVCDKITTKTKRVAEVLSPSPPLPEGEPSPHLIVNSQLKVVELNVNMHCDACAHQLKKKILKMRGVQTASTELSTGKVVVTGTMDGNKLVDYVYRRTKKQARIVPQPQPTATTPEQEPLKPEQSKEEQAAPAPPAPPEEIKTEDAAAPQAQGTDTNNNDKEEVQPKAAEEGGGQVVEATAETKPNVEVEEAKAAEAGDEMMGEDDHESMKRMMYQYYQYQPLYVMERIPPPQLFSDENPNACCVL 367
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
16 89520 91417 + CmoCh16G000130.1 Cmo16g00013 399048

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cmo16g00013 367 ProSiteProfiles Heavy-metal-associated domain profile. 63 128 IPR006121 GO:0046872
Cmo16g00013 367 ProSiteProfiles Heavy-metal-associated domain profile. 168 202 IPR006121 GO:0046872
Cmo16g00013 367 MobiDBLite consensus disorder prediction 222 327 - -
Cmo16g00013 367 CDD HMA 164 204 IPR006121 GO:0046872
Cmo16g00013 367 CDD HMA 71 128 IPR006121 GO:0046872
Cmo16g00013 367 PANTHER HEAVY METAL-ASSOCIATED ISOPRENYLATED PLANT PROTEIN 9 39 366 IPR044258 GO:0046872
Cmo16g00013 367 MobiDBLite consensus disorder prediction 305 327 - -
Cmo16g00013 367 MobiDBLite consensus disorder prediction 225 240 - -
Cmo16g00013 367 SUPERFAMILY HMA, heavy metal-associated domain 65 131 IPR036163 GO:0046872
Cmo16g00013 367 Gene3D - 64 136 - -
Cmo16g00013 367 Gene3D - 157 225 - -
Cmo16g00013 367 Coils Coil 38 58 - -
Cmo16g00013 367 SUPERFAMILY HMA, heavy metal-associated domain 160 217 IPR036163 GO:0046872
Cmo16g00013 367 Pfam Heavy-metal-associated domain 166 211 IPR006121 GO:0046872
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cmo16g00013 - - - cmos:111430912 538.11
       

WGDs- Genes

Select Gene_1 Gene_2 Event_name
Cmo16g00013 Cmo18g01380 CST
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cmo16g00013 Cmo-Chr16:89520 Cmo11g00025 Cmo-Chr11:107890 1.66E-29 dispersed
Cmo16g00013 Cmo-Chr16:89520 Cmo18g01380 Cmo-Chr18:12856335 3.02E-118 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi16g949 . . . . . . . . Cmo16g00013 Cmo18g01380 . . . . . . Cpe14g00012 . . . . . . . . . . . . . . Cone1ag1031 Cone5ag0738 . . . . . . . . . . . . . . . . . Cma16g00012 Cma18g01346 Car16g00010 Car18g01258 Cpe09g00006 . . . . . . . . . . . . . . . . . . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0013892 0 0 0 0 0 0 2 0 0 0 0 0 2 0 0 2 0 2 1 0 0 1 1 1 1 0 1 2 2 2 20
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Cmo16g00013 Cmo_Chr16 FPKM 7.961913 8.883244 8.136278 9.194656 10.26889 9.92441 10.621273 17.080244 15.733907 16.133999