Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cmo16g00018 ATGGAGACCCAACTTTTGTCTTCGGGGACGCGCCACGAGAGATTGCCGGAAAAGTATGAAAGGCCGGAGTCGGACAGGCCGAGGTTGTCGGAAGTGTGCTGTTTGGAGAACGTCCCAATCATCGACTTGGGATGCGAGGACAGAGGCTGGATGGTGGAACAAGTGGGGGAGGCCTGCAAGTGTTACGGGTTTTTCCAGGTGAGGAACCATGGAGTGAGTAAGGAATTGGTGGAGAGAACGATAGGGGTTGGGAATGCCTTCTTTGGGCTGCCGCTGGAGGAGAAGCTCAAACTTTACTCCGACGACCCTTCCAAGACGGTCAGGCTGTCCACAAGTTTCAACGTCCGGAAGGAGGAATTTCACAACTGGAGGGATTATCTCAGACTCCATTGCTATCCTCTCTCCAAATACCTGCCCCATTGGCCCACTAACCCTCCTCTCTTCAGGGAAGTTGTGAGTGAGTATTGCGTGCAAGTACGGGAACTTGGGTATACAATTCAGGAGCTCATATCGGAGAGCTTGGGCCTTCACAAGGACTACATTAGGGAGGTGCTGGGGGAACAGGGGCAGCACATGGCTGTCAATTATTACCCGCCCTGTCCCCAGCCAGAGCTCACCTACGGACTCCCTGCCCATACCGATCCCAACGCTCTCACGATCCTCCTTCAAGACCAGCACGTCGCAGGCCTCCAAGTCCTCAAAGACGGTAAGTGGCTCGCTGTCAGCCCCGAGCCCGATGCCTTTGTCGTCAACATTGGCGACCAGTTGCAGGCATTGAGCAATGGGGTTTACAAGAGCGTCTGGCACCGTGCGGTTGTGAATGTGGACAAGCCCAGGCTGTCCGTTGCTTCTTTCCTCTGCCCATGCGACGACGCCCTCATTAGCCCTGCACCGCCCCTCACCCGACATGGGCCTCCCGCCATTTACCGAGGCTTCACCTACGCAGAGTACTACAGTAAGTTTTGGAGCAGAAACTTGGATGAACGACATTGCTTGGAACTCTTTAAAAACCACTCCCCTCCTTAA 1026 54.78 METQLLSSGTRHERLPEKYERPESDRPRLSEVCCLENVPIIDLGCEDRGWMVEQVGEACKCYGFFQVRNHGVSKELVERTIGVGNAFFGLPLEEKLKLYSDDPSKTVRLSTSFNVRKEEFHNWRDYLRLHCYPLSKYLPHWPTNPPLFREVVSEYCVQVRELGYTIQELISESLGLHKDYIREVLGEQGQHMAVNYYPPCPQPELTYGLPAHTDPNALTILLQDQHVAGLQVLKDGKWLAVSPEPDAFVVNIGDQLQALSNGVYKSVWHRAVVNVDKPRLSVASFLCPCDDALISPAPPLTRHGPPAIYRGFTYAEYYSKFWSRNLDERHCLELFKNHSPP 341
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
16 101453 104373 - CmoCh16G000180.1 Cmo16g00018 399053

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cmo16g00018 341 PANTHER PROTEIN DOWNY MILDEW RESISTANCE 6 1 336 - -
Cmo16g00018 341 SUPERFAMILY Clavaminate synthase-like 12 327 - -
Cmo16g00018 341 ProSiteProfiles Fe(2+) 2-oxoglutarate dioxygenase domain profile. 188 288 IPR005123 -
Cmo16g00018 341 Pfam 2OG-Fe(II) oxygenase superfamily 190 288 IPR044861 -
Cmo16g00018 341 Pfam non-haem dioxygenase in morphine synthesis N-terminal 38 142 IPR026992 -
Cmo16g00018 341 PANTHER 2-OXOGLUTARATE (2OG) AND FE(II)-DEPENDENT OXYGENASE SUPERFAMILY PROTEIN-RELATED 1 336 - -
Cmo16g00018 341 Gene3D - 3 319 IPR027443 -
Cmo16g00018 341 MobiDBLite consensus disorder prediction 1 23 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cmo16g00018 K24028 DMR6, DLO; salicylic acid 3-hydroxylase [EC:1.14.11.-] - csv:101204347 586.645
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cmo05g00050 Cmo-Chr5:177952 Cmo16g00018 Cmo-Chr16:101453 2.23E-75 dispersed
Cmo08g00295 Cmo-Chr8:1813640 Cmo16g00018 Cmo-Chr16:101453 6.50E-81 dispersed
Cmo14g00238 Cmo-Chr14:1098159 Cmo16g00018 Cmo-Chr16:101453 7.95E-73 dispersed
Cmo15g01395 Cmo-Chr15:9484322 Cmo16g00018 Cmo-Chr16:101453 7.39E-127 dispersed
Cmo16g00018 Cmo-Chr16:101453 Cmo03g01357 Cmo-Chr3:10020050 7.45E-59 dispersed
Cmo16g01283 Cmo-Chr16:9150583 Cmo16g00018 Cmo-Chr16:101453 4.75E-59 dispersed
Cmo16g00018 Cmo-Chr16:101453 Cmo06g00414 Cmo-Chr6:1994400 7.80E-72 transposed
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi16g957 . . . . . . . Bma14g02030 Cmo16g00018 . . . . . . . . . . . . . . . . . . . . . . Cone1ag1024 Cone5ag0731 . . . . . . . Blo09g00001 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0009673 1 1 0 1 0 1 1 1 1 1 1 1 1 1 1 1 1 2 1 1 1 1 1 1 1 1 1 2 3 2 33
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Cmo16g00018 Cmo_Chr16 FPKM 10.34387 10.899678 16.90447 13.968698 16.917091 18.122423 14.539081 60.683941 62.800739 58.104851