Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cmo16g00019 ATGGAAAACGCCGCCCCAAGATCCGAATTCATGGCCACCTACGATTCCCCGCACCCTCTCTATGCCATGGCCATCTCTTCCGCCCACACCCACTCTCGCACTTTCCCCAATCGCATAGCCCTTGGTAGCTTCATCGAACAGTGCACCAACCGTGTCGACATTGTGTCTTTTGATCCAGATTCCCTCTCCATTCAAACGCATCCTTCTCTCTCCTTCGACCACCCCTACCCACCCACCAAGCTCATGTTCAATCCCGATGCCCTCTCCTCTCTCCGCAACTCCTCCGACATCTTGGCCTCCTCCGGCGACTATCTCCGCCTCTGGCAAGTTGGAGATTCTTCTATCGAACCCCTCTCTGTCCTCAACAACAGCAAAACCAGTGAATTCTGCGCCCCCTTAACTTCCTTCGACTGGAATGAAGTCGAGCCCAAGAGAATTGGAACCTCCAGCATTGATACCACTTGCACTATTTGGGATATTGAGAAGAGCGTGGTTGAAACCCAGTTCATAGCTCACGACAAAGAGGTTTATGACATTGCGTGGGGGGAAGCCCGAGTTTTTGCCTCCGTTTCCGCTGATGGGTCGGTCAGGATTTTCGACTTGAGAGATAAAGAGCACTCCACCATTATATACGAAAGCCCCCAACCCGATACCCCTTTGCTTAGACTGGCTTGGAACAAGCAGGACCTGCGGTACATGGCCACAATTTTGATGGACAGCAACAAAGTTGTTATTTTGGACATTCGCTCGCCAAGTGTGCCGGTTGCTGAGCTGGAGAGGCATCATTCCAGTGTCAATGCCATTGCCTGGGCTCCACGGAGCTGCAGACATATTTGCTCCGCTGGGGATGACAAACAGGCGCTTATTTGGGAGTTGCCAATGGTTGCAGGCCCGAATGGCATTGATCCAATGTCCATGTATTCTGCTGCACATGAAATTAACCAGTTGCAGTGGTCCGCCGCCCAGCCTGATTGGATTGCTCTGGCGTTTTCTAACAAGATGCAGCTTTTGAAAGTTTGA 1020 51.67 MENAAPRSEFMATYDSPHPLYAMAISSAHTHSRTFPNRIALGSFIEQCTNRVDIVSFDPDSLSIQTHPSLSFDHPYPPTKLMFNPDALSSLRNSSDILASSGDYLRLWQVGDSSIEPLSVLNNSKTSEFCAPLTSFDWNEVEPKRIGTSSIDTTCTIWDIEKSVVETQFIAHDKEVYDIAWGEARVFASVSADGSVRIFDLRDKEHSTIIYESPQPDTPLLRLAWNKQDLRYMATILMDSNKVVILDIRSPSVPVAELERHHSSVNAIAWAPRSCRHICSAGDDKQALIWELPMVAGPNGIDPMSMYSAAHEINQLQWSAAQPDWIALAFSNKMQLLKV 339
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
16 107077 108096 + CmoCh16G000190.1 Cmo16g00019 399054

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cmo16g00019 339 PANTHER WD REPEAT CONTAINING PROTEIN 6 339 IPR045159 -
Cmo16g00019 339 ProSiteProfiles Trp-Asp (WD) repeats profile. 169 209 IPR001680 GO:0005515
Cmo16g00019 339 SUPERFAMILY WD40 repeat-like 37 293 IPR036322 GO:0005515
Cmo16g00019 339 Pfam WD domain, G-beta repeat 169 200 IPR001680 GO:0005515
Cmo16g00019 339 Pfam WD domain, G-beta repeat 255 290 IPR001680 GO:0005515
Cmo16g00019 339 Gene3D - 20 338 IPR015943 GO:0005515
Cmo16g00019 339 SMART WD40_4 65 109 IPR001680 GO:0005515
Cmo16g00019 339 SMART WD40_4 114 159 IPR001680 GO:0005515
Cmo16g00019 339 SMART WD40_4 251 291 IPR001680 GO:0005515
Cmo16g00019 339 SMART WD40_4 162 200 IPR001680 GO:0005515
Cmo16g00019 339 ProSiteProfiles Trp-Asp (WD) repeats profile. 258 292 IPR001680 GO:0005515
Cmo16g00019 339 ProSitePatterns Trp-Asp (WD) repeats signature. 278 292 IPR019775 -
Cmo16g00019 339 PANTHER PROTEIN TRANSPARENT TESTA GLABRA 1 6 339 IPR031104 -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cmo16g00019 K11805 DCAF7, HAN11; DDB1- and CUL4-associated factor 7 - csv:101218986 619.772
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cmo11g01553 Cmo-Chr11:11185666 Cmo16g00019 Cmo-Chr16:107077 8.96E-149 dispersed
Cmo16g00019 Cmo-Chr16:107077 Cmo11g00700 Cmo-Chr11:3375068 9.83E-10 dispersed
Cmo16g00019 Cmo-Chr16:107077 Cmo14g00796 Cmo-Chr14:4064510 3.71E-150 transposed
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi16g958 . . Bda05g00144 . . . Bma10g01322 . Cmo16g00019 . . . . . . . Cpe14g00015 . . . . . . . . . . . . . . Cone1ag1023 Cone5ag0730 . . . . . . Blo07g00313 . . . . . . . . . . Cma16g00016 . Car16g00016 . . . . . . . . . . . . . . . . . . . . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0001974 2 3 2 4 2 2 3 2 2 2 2 2 2 2 2 3 2 4 2 2 2 2 2 2 2 1 2 2 3 1 66
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Cmo16g00019 Cmo_Chr16 FPKM 12.756411 10.953344 94.968117 112.543541 5.410807 4.431983 4.615246 276.015961 315.172821 308.413513