Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cmo16g00028 ATGTGTGGCTATGTAAAAGAAAAGGTGTTGAATGCATTCCAGGAGAATGAATGGACAAAAGTTATGGAGAGAGAGGAGTATTTCATACTACCAAATTTTGAGACCGCAGCAGTAGCCTCTTCACAGACATGTTCAACTCCTAGGAGGAGGAGGAGGAGGAGGAAGAAGAAAACCAACAACATGAACAAAAGAAGGTTTAGTGATGAACAAATCAGGTCACTGGAGTCCATATTTTACTCATCGGATTCAAAGCTCGATTCCAGGAAGAAGGTGCAGCTTGCAACAGAGTTGGGACTGCAACCTCGCCAAATTGCTATATGGTTTCAGAATAGAAGGGCAAGATGGAAGTCCAAGGAGATGGAGAACAATTTCAGGAGCCTCAGAGCTAATTATGACAATCTAGCATCTCAGTTTAAAACATTACAGGAAGAGAAGAACTCCTTGCTCTCACAGTTGCAGAAGCTAAGCGAGCTTGTTCACGAAGGACCTCGTGAGGGCCATTATTCCAATGAGATTGCAGAAACCATCTACGAGACAAAAGAAAAGCCACAAAGCTTCCATGATGAACTAGGACAGAATGGAGTCACGTATTTGAACAATAATTATAACACAGACAAGAGGGGTACAGAGAATGGAGAAGGTGATCGAGGACTTGAAATGACCCATTCGTCGGAAGGCAGAAGCAACGACAGAAGCCATGCGGTGGAGAAAGCATGTCAACTTTTGAACCCGAATGGTTCGTTTGAATCATCAGAGAATTGGTGCGGCTTTGATTCGGATGGTGGTGGTATCATATTTGAGTATCAGCCGTGTAGTAGTTTGCAGGAGCTAAGTTTCTGGGGATGA 846 43.62 MCGYVKEKVLNAFQENEWTKVMEREEYFILPNFETAAVASSQTCSTPRRRRRRRKKKTNNMNKRRFSDEQIRSLESIFYSSDSKLDSRKKVQLATELGLQPRQIAIWFQNRRARWKSKEMENNFRSLRANYDNLASQFKTLQEEKNSLLSQLQKLSELVHEGPREGHYSNEIAETIYETKEKPQSFHDELGQNGVTYLNNNYNTDKRGTENGEGDRGLEMTHSSEGRSNDRSHAVEKACQLLNPNGSFESSENWCGFDSDGGGIIFEYQPCSSLQELSFWG 281
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
16 137218 139128 + CmoCh16G000280.1 Cmo16g00028 399063

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cmo16g00028 281 PANTHER HOMEOBOX-LEUCINE ZIPPER PROTEIN 36 280 IPR045224 GO:0003700
Cmo16g00028 281 ProSitePatterns 'Homeobox' domain signature. 93 116 IPR017970 GO:0000981|GO:0006355
Cmo16g00028 281 MobiDBLite consensus disorder prediction 46 61 - -
Cmo16g00028 281 MobiDBLite consensus disorder prediction 208 233 - -
Cmo16g00028 281 PANTHER HOMEOBOX ASSOCIATED LEUCINE ZIPPER PROTEIN 36 280 - -
Cmo16g00028 281 SMART HOX_1 53 122 IPR001356 GO:0003677
Cmo16g00028 281 Pfam Homeobox associated leucine zipper 118 159 IPR003106 GO:0006355|GO:0043565
Cmo16g00028 281 CDD homeodomain 63 119 IPR001356 GO:0003677
Cmo16g00028 281 Coils Coil 117 158 - -
Cmo16g00028 281 MobiDBLite consensus disorder prediction 201 233 - -
Cmo16g00028 281 PRINTS Lambda-repressor HTH signature 89 98 IPR000047 GO:0003677
Cmo16g00028 281 PRINTS Lambda-repressor HTH signature 98 114 IPR000047 GO:0003677
Cmo16g00028 281 SUPERFAMILY Homeodomain-like 63 121 IPR009057 -
Cmo16g00028 281 Pfam Homeodomain 63 116 IPR001356 GO:0003677
Cmo16g00028 281 Gene3D - 61 123 - -
Cmo16g00028 281 ProSiteProfiles 'Homeobox' domain profile. 57 118 IPR001356 GO:0003677
Cmo16g00028 281 MobiDBLite consensus disorder prediction 40 65 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cmo16g00028 K09338 HD-ZIP; homeobox-leucine zipper protein - csv:101209671 225.713
       

WGDs- Genes

Select Gene_1 Gene_2 Event_name
Cmo16g00028 Cmo18g01371 CST
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cmo16g00028 Cmo-Chr16:137218 Cmo04g00899 Cmo-Chr4:4526610 2.06E-27 dispersed
Cmo14g02196 Cmo-Chr14:15656407 Cmo16g00028 Cmo-Chr16:137218 1.11E-38 wgd
Cmo16g00028 Cmo-Chr16:137218 Cmo18g01371 Cmo-Chr18:12831625 1.30E-94 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi16g986 . . Bda05g00138 Bda07g01954 . . Bma10g01316 Bma14g02025 Cmo16g00028 Cmo18g01371 . . . . . . . . . . . . . . . . . . . . . Cone1ag1012 Cone5ag0719 . . . . . . . . . . . . . . . . . Cma16g00024 Cma18g01338 Car16g00022 Car18g01252 . . . . . . . . . . . . . . . . . . . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0001722 2 3 1 3 2 2 3 2 2 1 2 2 3 2 2 3 2 3 0 2 2 2 2 2 2 2 2 5 2 3 66
       

Regulatory proteins

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
11236 PF00046 Homeodomain 4.10E-17 CL0123 Cmo TF
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Cmo16g00028 Cmo_Chr16 FPKM 0.360878 0.280246 0.719211 0.890815 0.516224 0.187918 0.600628 1.104778 1.176742 1.459923