Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cmo16g00043 ATGGCTTTGCTGAGTCCTCGATTGCATAGATTCCGCCTAACCAAGCTCCACTATGCCTCCGCCTCCATACCCACAAAGACAAACCAGCTCACTCTCAGAAGAAAAAGCCGTTGCTGCTCCTCCATAGCTATCGATGCTCCATCTTCTTTAACAGATGCTGCGGGAATCAGATGGGGCTCGACGACTCTGCAAGGATTGCGCGAAGAAATGGAGGACGACGTTGTTGTGCGGTCTGATGGTCTTAGTGGCTTCTTGTTTGCTGCAGTGTTCGATGGCCATGGTGGCTATTCCTCCGTTAAGTTCCTCAGAGAGGAGCTGTACAAAGACTGCGTAGCAGCTTTACAAGGTGGCCTGCTGTTGAATGGAGGGGATTTTGAAGTGATAAAAGCAGCTTTGGCGAAGGCTTTTGATGAGACTGATAAAAAGTTACTCCTTTTGCTTGAAGCAGAAGGGGAGGAAGATGAGTCTGGTTCCACGGCAACTGTTGCGTTCATACGAAACGATGTGTTGTTCGTTTCTCATGTTGGCGACTCTTGTGTTGTATTATCTCGTCCTGGAGGAGCACAGTTGTTGACTAGTTCTCATCGGCCTTATGGAAACAACACCACCTCACTGCAAGAAGTTAAAAGAATTAGAGAAGCAGGTGGATGGATTGTTAACGGAAGAATCTGTGGGGATATCTCTGTATCGCGTGCATTTGGCGACATACGGTTCAAGACGAAGAAAAACGAGATGCTACAAAAAGGAGTTGAAGAAGGGAGATGGTCTGAAAAGTTTGTTTCTCGTGTACGTTTCAATGGAGACTTGGTTACTGCATCACCGGAAATTTTCCAAACTACACTGGGATCAAATGTTGAATTTATGCTGATAGCAACAGATGGCCTATGGGATTACATGAATAGATCCGATGCGGTTAAGTTTGTTCGAAATGAACTTAGACAGCATGGCGATGTTCAGCTAGCTTGTGAAGCCCTCGCGCAAGCAGCCTTGGATAAAGGGTCACAAGACAATATTAGCATTATCATGGCTGATTTCGGGCGGACGGATTGGCAGAACTTTCAGATGAAGCAAGAGAACGTCATATTTGAAGTGGCTCAAGCTTTTGCTACGATCGGGGTCGTTTCTCTCGGTATTTGGTGGGCGTCCTCGACTTTCTCCCTTTAA 1164 46.48 MALLSPRLHRFRLTKLHYASASIPTKTNQLTLRRKSRCCSSIAIDAPSSLTDAAGIRWGSTTLQGLREEMEDDVVVRSDGLSGFLFAAVFDGHGGYSSVKFLREELYKDCVAALQGGLLLNGGDFEVIKAALAKAFDETDKKLLLLLEAEGEEDESGSTATVAFIRNDVLFVSHVGDSCVVLSRPGGAQLLTSSHRPYGNNTTSLQEVKRIREAGGWIVNGRICGDISVSRAFGDIRFKTKKNEMLQKGVEEGRWSEKFVSRVRFNGDLVTASPEIFQTTLGSNVEFMLIATDGLWDYMNRSDAVKFVRNELRQHGDVQLACEALAQAALDKGSQDNISIIMADFGRTDWQNFQMKQENVIFEVAQAFATIGVVSLGIWWASSTFSL 387
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
16 187305 190450 - CmoCh16G000430.1 Cmo16g00043 399078
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cmo16g00043 387 CDD PP2Cc 56 345 IPR001932 -
Cmo16g00043 387 Pfam Protein phosphatase 2C 59 338 IPR001932 -
Cmo16g00043 387 SMART PP2C_4 47 343 IPR001932 -
Cmo16g00043 387 PANTHER PROTEIN PHOSPHATASE 2C 57 6 382 - -
Cmo16g00043 387 SUPERFAMILY PP2C-like 54 346 IPR036457 -
Cmo16g00043 387 ProSitePatterns PPM-type phosphatase domain signature. 86 94 IPR000222 GO:0043169
Cmo16g00043 387 ProSiteProfiles PPM-type phosphatase domain profile. 57 345 IPR001932 -
Cmo16g00043 387 Gene3D - 56 353 IPR036457 -
Cmo16g00043 387 PANTHER PROTEIN PHOSPHATASE 2C 6 382 IPR015655 GO:0004722|GO:0006470
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cmo16g00043 Cmo-Chr16:187305 Cmo04g02531 Cmo-Chr4:18596607 1.37E-33 dispersed
Cmo16g00043 Cmo-Chr16:187305 Cmo18g01351 Cmo-Chr18:12755649 0 wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cmo16g00043 K04457 - csv:101218076 664.455