Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cmo16g00045 ATGGAAAAGTCTAGATCTAAGAGAAACTACTACTATGACCACCAAGACTATGATTCCGAGGCGATGGGTAGAACCAGACCTCGTTACAACAATCACTACGCCAATAATAACTATCGTCACCGTGGGAGTGCTGTTCGACCGACTAAACCTCAAGACCAATCTCTTATGGTCACCACGACTTACAGGATACTCTGTCATGATGCCAAGGCCGGGGGAGTTATTGGCAAATCTGGTAGTATCATTAAGTCCATAAGGCAGCACACCGGCGCGTGGATCAACGTGCATGAGCTTGTTCCCGGCGATGAGGAGAGAATAATTGAGATATCGGACACTCGGCGGCGGGACCCGGAAGGCCGGATGCCGTCATTCTCTCCGGCGCAAGAAGCGCTTTTCTTGATTCATGAAAGGATTCTCGAGAGTGAGATGAGTCCTGGGTTCAATGGAATGGGCTATGGTCCTGAGGATGAGGAGGATGACTACGGCGGCGTTAGAGGAGGAGCTGGTGGCGGTAGTAGCCGTGTTGCAACAAGGCTTGTCGTGTCTAGAATGCACGTAGGTTGTTTGCTTGGCAAGGGAGGAAAGATAATCGAACAAATGAGGATGGAAACCAAGACCCAGATAAGGATTCTTCCCAGAGATCACAATTTGCCTCGTTGCATTTCAATGTCGGAGGAGATTGTCCAGATTGTTGGAGAAGCAAATGCTGTAAAGAAAGCTGTAGCTATCGTTTCATCACGCTTGAGAGAGAGTCAGCATCGCAACCGTAGTCATTTCCATGGGCGTCTACATTCACCAGAACGTATTTTACCTCCTGATGATGATTATGTTCCACCTATTGCCCGACGATTATCGATGGATGGACGACCATTCAGACCACGCATATCTAATACAAGAGGCAATGACTATTCCAACCGTCAATCTAATTTTTTGGTGGAGCCTGGAGCTGCTTCTGTTAACGACAATATGATGCCCTTTTATGGTGAGGACCTTGTATTTAGAATATTATGCCCAATCGATAAGGTTGATAGTGTTATTGGAGACTCTGATGGAATCATAGAATTACTTCGGGATGAAGTTGGTGTGGATATCAAAGTTTCTGATCCTGTGACGGGTTCGAACGAACAGATTCTAATAATTTCTTCGGATGAGGTACTCCAACTTCCTTTTTCCTTGTTGGCATATATCATGATTCACTTTTGCCAAGGGTCAAATCACTCGAGTATACCTTTACTTGCAGAAGATATATTAGGAGTTATACAAGCAATCGGTCCAGATGATGAGCTTTTTCCAGCACAGGAAGCTTTGTTACACATCCAAACTCGCATTGTTGATCTTGTTCCTGATAAAGATAACATCGTAACTACAAGGTTACTTGTACCATCAAGTGATATTGGATGTTTGGAGGGAAGAGATGGATCATTGTTAGAGATGAAGAGACTAACCGGTGCAAATGTACATATTGTGCCACGAGAAGAACTTCCCATGTTTGTATCAGGGGCTGACGAGCTCGTACAGATCATAGGAGACATAAAAGCAGCTCGAGATGCAGTTGTTGAGTTAACATCTAGATTACGAAATTATCTTTACAAGGAACCATTCCAGAAAGATGCAAGTCCTCCAGTCTCATTACCAAGCACCATGGGCAGTTTAGGACTCGAGGAATCATCTTCAAATAATAATGCTGCAGCTCGTGAAGTTCATAGTGGAAATGATTCTTCAATCACAGCCTATCAAAATGTGCAACCTTTTGGAACACCACAGCTTCTAAAGGAAAATGGAGGGTCGAGCAATGAAACTGGTACGCAGAATGAAAATGACCGACGTGAAGATTTGCCTAGTGGGTTAAATAGAATCCCTGTGCCGCTTGTCACTCGGAGTACACTTGAAGTTGTGATACCAGAGGCTGCAGTTCCCAAGCTTATAACAAAGTCAAAAAACAAGCTTGCTCAGATCAGTGAGGTGTTATCCGGAGCCAATGTTACACTGGTAGAAGATAGACCAGATGAAACCCAGAAGATAATCCAAATATCAGGCACACCAGAGCAGGCCGAGAGAGCCCAGAGCTTGCTGCAAGGCTTTATTTTGAGCATGCAAGAAGATGGGCCATAA 2109 44.62 MEKSRSKRNYYYDHQDYDSEAMGRTRPRYNNHYANNNYRHRGSAVRPTKPQDQSLMVTTTYRILCHDAKAGGVIGKSGSIIKSIRQHTGAWINVHELVPGDEERIIEISDTRRRDPEGRMPSFSPAQEALFLIHERILESEMSPGFNGMGYGPEDEEDDYGGVRGGAGGGSSRVATRLVVSRMHVGCLLGKGGKIIEQMRMETKTQIRILPRDHNLPRCISMSEEIVQIVGEANAVKKAVAIVSSRLRESQHRNRSHFHGRLHSPERILPPDDDYVPPIARRLSMDGRPFRPRISNTRGNDYSNRQSNFLVEPGAASVNDNMMPFYGEDLVFRILCPIDKVDSVIGDSDGIIELLRDEVGVDIKVSDPVTGSNEQILIISSDEVLQLPFSLLAYIMIHFCQGSNHSSIPLLAEDILGVIQAIGPDDELFPAQEALLHIQTRIVDLVPDKDNIVTTRLLVPSSDIGCLEGRDGSLLEMKRLTGANVHIVPREELPMFVSGADELVQIIGDIKAARDAVVELTSRLRNYLYKEPFQKDASPPVSLPSTMGSLGLEESSSNNNAAAREVHSGNDSSITAYQNVQPFGTPQLLKENGGSSNETGTQNENDRREDLPSGLNRIPVPLVTRSTLEVVIPEAAVPKLITKSKNKLAQISEVLSGANVTLVEDRPDETQKIIQISGTPEQAERAQSLLQGFILSMQEDGP 702
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
16 192974 197728 - CmoCh16G000450.1 Cmo16g00045 399080

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cmo16g00045 702 SMART kh_6 172 248 IPR004087 GO:0003676
Cmo16g00045 702 SMART kh_6 328 397 IPR004087 GO:0003676
Cmo16g00045 702 SMART kh_6 451 525 IPR004087 GO:0003676
Cmo16g00045 702 SMART kh_6 57 138 IPR004087 GO:0003676
Cmo16g00045 702 SMART kh_6 624 695 IPR004087 GO:0003676
Cmo16g00045 702 MobiDBLite consensus disorder prediction 535 569 - -
Cmo16g00045 702 SUPERFAMILY Eukaryotic type KH-domain (KH-domain type I) 52 111 IPR036612 GO:0003723
Cmo16g00045 702 MobiDBLite consensus disorder prediction 287 306 - -
Cmo16g00045 702 CDD PCBP_like_KH 60 134 - -
Cmo16g00045 702 ProSiteProfiles Type-1 KH domain profile. 625 690 - -
Cmo16g00045 702 MobiDBLite consensus disorder prediction 252 273 - -
Cmo16g00045 702 Gene3D K Homology domain, type 1 327 386 IPR036612 GO:0003723
Cmo16g00045 702 Gene3D K Homology domain, type 1 624 696 IPR036612 GO:0003723
Cmo16g00045 702 ProSiteProfiles Type-1 KH domain profile. 58 130 - -
Cmo16g00045 702 Pfam KH domain 454 519 IPR004088 GO:0003723
Cmo16g00045 702 Pfam KH domain 176 243 IPR004088 GO:0003723
Cmo16g00045 702 Pfam KH domain 60 109 IPR004088 GO:0003723
Cmo16g00045 702 Pfam KH domain 627 691 IPR004088 GO:0003723
Cmo16g00045 702 ProSiteProfiles Type-1 KH domain profile. 173 243 - -
Cmo16g00045 702 Gene3D K Homology domain, type 1 170 252 IPR036612 GO:0003723
Cmo16g00045 702 CDD PCBP_like_KH 177 244 - -
Cmo16g00045 702 SUPERFAMILY Eukaryotic type KH-domain (KH-domain type I) 175 254 IPR036612 GO:0003723
Cmo16g00045 702 Gene3D - 397 528 - -
Cmo16g00045 702 SUPERFAMILY Eukaryotic type KH-domain (KH-domain type I) 445 532 IPR036612 GO:0003723
Cmo16g00045 702 CDD KH-I 627 691 - -
Cmo16g00045 702 SUPERFAMILY Eukaryotic type KH-domain (KH-domain type I) 617 698 IPR036612 GO:0003723
Cmo16g00045 702 MobiDBLite consensus disorder prediction 539 569 - -
Cmo16g00045 702 ProSiteProfiles Type-1 KH domain profile. 329 392 - -
Cmo16g00045 702 PANTHER RNA-BINDING KH DOMAIN-CONTAINING PROTEIN RCF3 3 605 - -
Cmo16g00045 702 SUPERFAMILY Eukaryotic type KH-domain (KH-domain type I) 322 382 IPR036612 GO:0003723
Cmo16g00045 702 Gene3D K Homology domain, type 1 57 140 IPR036612 GO:0003723
Cmo16g00045 702 MobiDBLite consensus disorder prediction 584 616 - -
Cmo16g00045 702 PANTHER KH DOMAIN CONTAINING RNA BINDING PROTEIN 3 605 - -
Cmo16g00045 702 MobiDBLite consensus disorder prediction 584 601 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cmo16g00045 K21444 PCBP3_4; poly(rC)-binding protein 3/4 - csv:101217605 1153.27
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cmo16g00045 Cmo-Chr16:192974 Cmo19g00500 Cmo-Chr19:5942749 1.35E-52 dispersed
Cmo16g00045 Cmo-Chr16:192974 Cmo18g01352 Cmo-Chr18:12759697 0 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi16g1025 . . . . Bpe03g00230 . . . Cmo16g00045 . . . . . Sed07g0871 . Cpe14g00031 Bhi01g01505 Tan01g0081 Cmetu06g1355 . Hepe07g0050 Mch10g0048 . . . . . . . . Cone1ag0995 Cone5ag0699 . . . . . Cme06g01156 Blo07g00331 . . . . . . . . . . Cma16g00038 Cma18g01323 Car16g00038 Car18g01235 . . . . . . . . . Cla05g00979 Cam05g1071 . . . . Cre05g1090 . Csa03g01974 Chy06g01186 .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0007315 0 1 1 0 1 1 2 1 1 1 1 1 2 1 1 2 1 2 2 1 1 1 1 1 1 1 1 4 2 1 37
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Cmo16g00045 Cmo_Chr16 FPKM 36.034409 38.551765 29.704159 32.132069 44.094414 50.390812 49.553009 52.494595 56.032597 47.155163