Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cmo16g00047 ATGTTAACCATTCCTGTAAATCCAAACTCCCTGTGTGACTTTGAAGTCGATTATGAGTCAGAGAAGAAAGCTTCAATTGTGTACAAGGCTTTAGTAGTCGATAAAGAGTTGCAGCCAGACAAGGTGAAAAGGGAGATGACAGTTTCTGATGGAAAACTTTCTATACACCTTGAGGCAGTGGAAGCAAGATTTCTGCGTGCATCATTCAGTGCTTTTGTAGACGTGCTTACTCTTGCCACAAAAACAATCGAAGATTTCGGACGAGGAGTGGATTTCTGA 279 41.58 MLTIPVNPNSLCDFEVDYESEKKASIVYKALVVDKELQPDKVKREMTVSDGKLSIHLEAVEARFLRASFSAFVDVLTLATKTIEDFGRGVDF 92
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
16 198005 199781 + CmoCh16G000470.1 Cmo16g00047 399082

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cmo16g00047 92 Pfam Transcription factor Pcc1 13 84 IPR015419 -
Cmo16g00047 92 Gene3D - 7 90 - -
Cmo16g00047 92 PANTHER EKC/KEOPS COMPLEX SUBUNIT PCC1 FAMILY MEMBER 12 87 IPR015419 -
Cmo16g00047 92 PANTHER GEO08993P1 12 87 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cmo16g00047 K15902 LAGE3, PCC1; EKC/KEOPS complex subunit LAGE3/PCC1 - csv:101217139 144.436
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cmo16g00047 Cmo-Chr16:198005 Cmo18g01354 Cmo-Chr18:12768436 3.87E-48 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi16g1030 . . . . Bpe03g00194 . . Bma14g02011 Cmo16g00047 . . . . . Sed13g0050 . Cpe14g00032 Bhi01g01503 Tan01g0083 Cmetu06g0196 . Hepe07g0052 Mch10g0050 . . . . . . . . . Cone5ag0697 . . . . . Cme06g01153 . . . . . . . . . . . . . Car16g00039 Car18g01238 . . . . . . . . . Cla05g00977 Cam05g1070 Cec05g1076 Cco05g1068 Clacu05g1062 Cmu05g1013 Cre05g1089 . Csa03g01976 Chy06g01189 .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0009672 1 1 0 1 1 1 2 1 1 1 1 1 1 1 1 2 1 1 2 1 1 1 1 1 1 1 1 1 1 1 32
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Cmo16g00047 Cmo_Chr16 FPKM 23.950699 23.4526 22.944696 24.555397 22.769262 21.671776 23.44173 30.415966 29.304512 28.824982