Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cmo16g00048 ATGGGGTCTAGTAGTTTGAGCTCAACATTTTCTGGGACAGAAACAAAATCTTGTACAATGCCCATCTCACAAGAAACGTCCAATTTTGATGAGATTTCTATGAAGCAGAGTTTGATTTTCTCTGATTGTCTCAAGGATTTGAAGAACCTGAGAGCACAATTATACTCAGCAGCAGAGTATTTTGAACTCTCTTACACGAATGACGACCAAAAACAGATAGTGGTAGAAACGTTGAAAGATTATGCTGTTAAAGCTCTTGTGAACACTGTGGATCATTTAGGTTCTGTTAATGATCTTTTGGATGAAAAAGTGGATGATGTTTCTGGAACGGAGTTCAGGGTGTCATGCATTGAACAGAGGCTAAGAACGTGCCAAGAGTATATCGATCACGAAGGACATTCCCAACAATCCCTGGTGATAAATACGCCAAAGTATCATAAGCACTACATATTACAAGGCAAGTTTACTGTTGTTACCCCCACCCCCGCGGGGGAGACCATGAACGGTGGTACCCAAACTCGATCCAAGAACAAAGGATGCAGCCTAGATGATGAAGATGAGTGGCACCAATTTAGAAATGGTAAGCTGCCGAGACAAACTAAAGAAAATTCTCCTGTGCCTTCTCAACGACCTTCCCCGTCTCCGCAACTTAGAACGTTCTCGTTCACGTCTACCATGCCCAAGAAGGAATTAGGTTCATATGCTCTTTTCCCTTTAGCTGCCAGTTTGTGTGATATTGGTTTTAATGCAAATTATGTTTGTTTCAAACCAGATAAGCGGTCGGTTTCTCCACACCGGTTTCCACTTTTGCGTTCTGGTTCGCTCTCGAGTAGACCAAAGACACAAAGCTCAAGTCGACCAACGACTCCCAACTCAAGTACGCCAACCACTCCAAGCATTTCCAATGGGCAACGACGGTACCCTTCAGCACCCAGGAAATCAGCATCGATGCGGATGCCAGCAGAAAGGGATAACAGCAAAGATGTTGAACAATATCCCAGCAAAAGCAAACGCCTCCTGAAGGCCTTGCTTAGCCGACGCAAGTCAAAGAAAGACGATACATTGTACACTTACTTGGATGAATACTAA 1089 43.71 MGSSSLSSTFSGTETKSCTMPISQETSNFDEISMKQSLIFSDCLKDLKNLRAQLYSAAEYFELSYTNDDQKQIVVETLKDYAVKALVNTVDHLGSVNDLLDEKVDDVSGTEFRVSCIEQRLRTCQEYIDHEGHSQQSLVINTPKYHKHYILQGKFTVVTPTPAGETMNGGTQTRSKNKGCSLDDEDEWHQFRNGKLPRQTKENSPVPSQRPSPSPQLRTFSFTSTMPKKELGSYALFPLAASLCDIGFNANYVCFKPDKRSVSPHRFPLLRSGSLSSRPKTQSSSRPTTPNSSTPTTPSISNGQRRYPSAPRKSASMRMPAERDNSKDVEQYPSKSKRLLKALLSRRKSKKDDTLYTYLDEY 362
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
16 199875 202493 - CmoCh16G000480.1 Cmo16g00048 399083

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cmo16g00048 362 MobiDBLite consensus disorder prediction 274 309 - -
Cmo16g00048 362 PANTHER PROTEIN ABIL3 22 362 - -
Cmo16g00048 362 MobiDBLite consensus disorder prediction 197 220 - -
Cmo16g00048 362 MobiDBLite consensus disorder prediction 161 220 - -
Cmo16g00048 362 MobiDBLite consensus disorder prediction 161 177 - -
Cmo16g00048 362 MobiDBLite consensus disorder prediction 317 335 - -
Cmo16g00048 362 PANTHER ABL INTERACTOR FAMILY MEMBER 22 362 IPR028457 -
Cmo16g00048 362 MobiDBLite consensus disorder prediction 178 196 - -
Cmo16g00048 362 MobiDBLite consensus disorder prediction 266 336 - -
Cmo16g00048 362 Gene3D - 29 128 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cmo16g00048 - - - csv:101216900 469.544
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cmo14g02131 Cmo-Chr14:15396902 Cmo16g00048 Cmo-Chr16:199875 7.25E-38 dispersed
Cmo16g00048 Cmo-Chr16:199875 Cmo18g01355 Cmo-Chr18:12769782 0 wgd
Cmo16g00048 Cmo-Chr16:199875 Cmo18g01355 Cmo-Chr18:12769782 0 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi16g1031 . . . Bda07g01938 Bpe03g00193 . . . Cmo16g00048 . . . . . . . Cpe14g00033 Bhi01g01500 . . . . . . . . . . . . . Cone1ag0991 Cone5ag0696 . . . . . Cme06g01152 . Blo09g00021 . . . . . . . . . Cma16g00040 . . Car18g01239 . . . . . . . . . Cla05g00976 Cam05g1069 Cec05g1075 Cco05g1067 Clacu05g1061 Cmu05g1012 Cre05g1088 . Csa03g01977 Chy06g01190 .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0004623 1 4 1 1 1 1 1 1 1 1 1 1 2 1 1 2 1 3 2 1 1 1 1 1 1 1 1 3 2 2 42
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Cmo16g00048 Cmo_Chr16 FPKM 23.163361 21.559887 22.375996 22.194553 61.432785 52.73698 61.94569 16.099039 17.144949 17.498392