Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cmo16g00056 ATGGATTTGGATAGTATTGAGTGTGTATCATCTTCAGATGGTCTCGATGAGGATGAGATCCATCTGCATCACACTCTTCATCCTTATTCCCATTCTCATCATCATCCAGAGTTGTCATCGACGAAACCTCGTAATGGAAGCAACAATAGTGCTATCACAGGCCCCACTGCGACTGCGCCGGCCACTAGCGTCCATGAATTGCTCGAGTGCCCTGTCTGCACCAATTCTATGTACCCACCCATCCATCAGTGCCACAATGGACATACATTATGTTCTACATGTAAAACACGGGTTCATAATCGTTGCCCTACTTGTAGACAAGAGCTTGGAGATATTAGGTGCTTAGCACTGGAGAAGGTGGCGGAGTCACTCGAATTGCCTTGCAAGTATTATTCCTTGGGATGCCCCGAGATATTTCCATACTACAGTAAACTTAAGCATGAGGCTTTGTGCAACTTCAGACCATACAATTGCCCATATGCCGGGTCGGAATGCTCTGCTGTTGGAGATATTCCTTTCCTTGTTGCTCATCTGAGGGATGACCACAAGGTGGACATGCACAGTGGATGCACATTCAACCATCGCTATGTGAAATCCAATCCAAGGGAAGTGGAGAATGCCACTTGGATGCTTACTGTGTTCAATTGTTTTGGTCAATATTTCTGCCTTCACTTTGAAGCCTTTCAGCTTGGCATGGCTCCAGTCTATATGGCTTTCCTTCGTTTCATGGGTGATGAGAATGAGGCTCGAACCTACAGCTACAGTCTTGAGGTTGGTGGATACGGTCGAAAACTAATATGGGAAGGCACGCCACGAAGTATTAGAGATAGTCATCGAAAAGTGAGGGACAGCCATGATGGGCTAATCATTCAAAGAAATATGGCTCTATTCTTCTCTGGTGGGGATAGGAAGGAACTGAAGCTAAGAGTTACAGGAAGGATATGGAAGGAACAAAACCCAGATGCTGGGGTCTGCATACCGAACCTGTGTAGCTGA 996 46.08 MDLDSIECVSSSDGLDEDEIHLHHTLHPYSHSHHHPELSSTKPRNGSNNSAITGPTATAPATSVHELLECPVCTNSMYPPIHQCHNGHTLCSTCKTRVHNRCPTCRQELGDIRCLALEKVAESLELPCKYYSLGCPEIFPYYSKLKHEALCNFRPYNCPYAGSECSAVGDIPFLVAHLRDDHKVDMHSGCTFNHRYVKSNPREVENATWMLTVFNCFGQYFCLHFEAFQLGMAPVYMAFLRFMGDENEARTYSYSLEVGGYGRKLIWEGTPRSIRDSHRKVRDSHDGLIIQRNMALFFSGGDRKELKLRVTGRIWKEQNPDAGVCIPNLCS 331
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
16 228802 231889 + CmoCh16G000560.1 Cmo16g00056 399091
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cmo16g00056 331 ProSiteProfiles Zinc finger SIAH-type profile. 123 183 IPR013010 GO:0008270
Cmo16g00056 331 CDD RING-HC_SIAHs 68 106 - -
Cmo16g00056 331 CDD Sina 184 312 - -
Cmo16g00056 331 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 29 122 IPR013083 -
Cmo16g00056 331 ProSiteProfiles Zinc finger RING-type profile. 70 106 IPR001841 -
Cmo16g00056 331 Pfam Seven in absentia protein family 112 311 IPR018121 GO:0005737|GO:0006511|GO:0007275
Cmo16g00056 331 PANTHER E3 UBIQUITIN PROTEIN LIGASE SIAH 1 323 - -
Cmo16g00056 331 MobiDBLite consensus disorder prediction 41 58 - -
Cmo16g00056 331 Gene3D Apoptosis, Tumor Necrosis Factor Receptor Associated Protein 2; Chain A 178 311 IPR008974 GO:0005515
Cmo16g00056 331 SUPERFAMILY TRAF domain-like 123 315 - -
Cmo16g00056 331 SUPERFAMILY RING/U-box 58 110 - -
Cmo16g00056 331 PANTHER E3 UBIQUITIN-PROTEIN LIGASE 1 323 - -
Cmo16g00056 331 MobiDBLite consensus disorder prediction 28 58 - -
Cmo16g00056 331 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 123 177 IPR013083 -
       

Event-related genes

Select Gene_1 Gene_2 Event_name
Cmo16g00056 Cmo18g01361 CST
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cmo15g00849 Cmo-Chr15:4296437 Cmo16g00056 Cmo-Chr16:228802 1.43E-169 dispersed
Cmo16g00056 Cmo-Chr16:228802 Cmo18g01362 Cmo-Chr18:12803589 0 dispersed
Cmo16g00056 Cmo-Chr16:228802 Cmo18g01361 Cmo-Chr18:12800605 0 wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cmo16g00056 K04506 - csv:101215696 668.692